From c4bf9ccd6e3e86575b900b761e4d8428acc36e44 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Thu, 9 Aug 2012 11:15:37 +0000 Subject: [PATCH] upgraded QA script to use new plot scores count feature git-svn-id: http://biopieces.googlecode.com/svn/trunk@1890 74ccb610-7750-0410-82ae-013aeee3265d --- bp_scripts/QA_454_report.rb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bp_scripts/QA_454_report.rb b/bp_scripts/QA_454_report.rb index d747fdb..37da5be 100755 --- a/bp_scripts/QA_454_report.rb +++ b/bp_scripts/QA_454_report.rb @@ -133,10 +133,10 @@ class Report "read_sff -m -i #{@sff_file} | progress_meter | plot_distribution -k SEQ_LEN -T 'Length Distribution - unclipped' -t png -o #{@plot1} | - plot_scores -T 'Mean Quality Scores - unclipped' -t png -o #{@plot2} | + plot_scores -c -T 'Mean Quality Scores - unclipped' -t png -o #{@plot2} | clip_seq | plot_distribution -k SEQ_LEN -T 'Length Distribution - clipped' -t png -o #{@plot3} | - plot_scores -T 'Mean Quality Scores - clipped' -t png -o #{@plot4} | + plot_scores -c -T 'Mean Quality Scores - clipped' -t png -o #{@plot4} | mean_scores | bin_vals -k SCORES_MEAN -b 5 | plot_histogram -s num -k SCORES_MEAN_BIN -T 'Mean score bins' -X 'Bins (size 5)' -Y 'Count' -t png -o #{@plot5} -x" -- 2.39.2