From c460a7a4917df591f7e422776ee388763f49742a Mon Sep 17 00:00:00 2001
From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Thu, 13 Oct 2011 10:09:23 +0000
Subject: [PATCH] smoothed ruby code to get rid of warnings

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1561 74ccb610-7750-0410-82ae-013aeee3265d
---
 code_ruby/lib/maasha/filesys.rb |  4 ++--
 code_ruby/lib/maasha/seq.rb     | 10 +++++-----
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/code_ruby/lib/maasha/filesys.rb b/code_ruby/lib/maasha/filesys.rb
index b3b450a..00530d6 100644
--- a/code_ruby/lib/maasha/filesys.rb
+++ b/code_ruby/lib/maasha/filesys.rb
@@ -84,8 +84,8 @@ class Filesys
   end
 
   # Method to puts directoy on Filesys objects.
-  def puts *args
-    @io.puts *args
+  def puts(*args)
+    @io.puts(*args)
   end
 
   private
diff --git a/code_ruby/lib/maasha/seq.rb b/code_ruby/lib/maasha/seq.rb
index 2919cfc..9eb4fbf 100644
--- a/code_ruby/lib/maasha/seq.rb
+++ b/code_ruby/lib/maasha/seq.rb
@@ -179,8 +179,8 @@ class Seq
     raise SeqError, "Missing seq_name" if self.seq_name.nil?
     raise SeqError, "Missing seq"      if self.seq.nil?
 
-    seq_name = self.seq_name
-    seq      = self.seq
+    seq_name = self.seq_name.to_s
+    seq      = self.seq.to_s
 
     unless wrap.nil?
       seq.gsub!(/(.{#{wrap}})/) do |match|
@@ -199,9 +199,9 @@ class Seq
     raise SeqError, "Missing seq"      if self.seq.nil?
     raise SeqError, "Missing qual"     if self.qual.nil?
 
-    seq_name = self.seq_name
-    seq      = self.seq
-    qual     = self.qual
+    seq_name = self.seq_name.to_s
+    seq      = self.seq.to_s
+    qual     = self.qual.to_s
 
     "@" + seq_name + $/ + seq + $/ + "+" + $/ + qual + $/
   end
-- 
2.39.2