From bcb675b0fe3a5912ac8a2316b7b813938283e3e7 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Thu, 12 Aug 2010 09:29:39 +0000 Subject: [PATCH] added test for blast biopieces git-svn-id: http://biopieces.googlecode.com/svn/trunk@1055 74ccb610-7750-0410-82ae-013aeee3265d --- bp_test/in/blast_seq.in.1 | 40 + bp_test/in/blast_seq.in.2 | 4 + bp_test/in/blast_seq.in.3 | 40 + bp_test/in/blast_seq.in.4 | 4 + bp_test/in/create_blast_index.in.1 | 40 + bp_test/in/create_blast_index.in.2 | 40 + bp_test/in/read_blast_tab.in | 10 + bp_test/in/write_blast.in | 15 + bp_test/lib/test.sh | 36 +- bp_test/out/blast_seq.out.1 | 109 + bp_test/out/blast_seq.out.2 | 349 ++ bp_test/out/blast_seq.out.3 | 154 + bp_test/out/blast_seq.out.4 | 184 + bp_test/out/blast_seq.out.5 | 7054 ++++++++++++++++++++++++++ bp_test/out/read_blast_tab.out.1 | 135 + bp_test/out/read_blast_tab.out.2 | 15 + bp_test/out/write_blast.out.1 | 1 + bp_test/out/write_blast.out.2 | 2 + bp_test/out/write_blast.out.3 | 1 + bp_test/test/test_blast_seq | 28 + bp_test/test/test_create_blast_index | 11 + bp_test/test/test_read_blast_tab | 11 + bp_test/test/test_write_blast | 16 + bp_test/test/test_write_fasta | 6 +- bp_test/test/test_write_tab | 12 +- 25 files changed, 8306 insertions(+), 11 deletions(-) create mode 100644 bp_test/in/blast_seq.in.1 create mode 100644 bp_test/in/blast_seq.in.2 create mode 100644 bp_test/in/blast_seq.in.3 create mode 100644 bp_test/in/blast_seq.in.4 create mode 100644 bp_test/in/create_blast_index.in.1 create mode 100644 bp_test/in/create_blast_index.in.2 create mode 100644 bp_test/in/read_blast_tab.in create mode 100644 bp_test/in/write_blast.in create mode 100644 bp_test/out/blast_seq.out.1 create mode 100644 bp_test/out/blast_seq.out.2 create mode 100644 bp_test/out/blast_seq.out.3 create mode 100644 bp_test/out/blast_seq.out.4 create mode 100644 bp_test/out/blast_seq.out.5 create mode 100644 bp_test/out/read_blast_tab.out.1 create mode 100644 bp_test/out/read_blast_tab.out.2 create mode 100644 bp_test/out/write_blast.out.1 create mode 100644 bp_test/out/write_blast.out.2 create mode 100644 bp_test/out/write_blast.out.3 create mode 100755 bp_test/test/test_blast_seq create mode 100755 bp_test/test/test_create_blast_index create mode 100755 bp_test/test/test_read_blast_tab create mode 100755 bp_test/test/test_write_blast diff --git a/bp_test/in/blast_seq.in.1 b/bp_test/in/blast_seq.in.1 new file mode 100644 index 0000000..70d044c --- /dev/null +++ b/bp_test/in/blast_seq.in.1 @@ -0,0 +1,40 @@ +SEQ: CCGCTTCCCCGGGGTGGCGACCTCGGCGGGCCCGGTGGACATGCCGGCCCTGATCCAGGGCAAAGCCGCGCTGGTTGAAAGCATGCGGTCGGAGAAGTACGTCGATCTGGCCGCGGACTACGGCTGGACGATGATCTCGGGGGACGCATCGTTCACCGGGACCCAGAACGCACCACTGCTCCGGGTCGCCTCCCCGGACGGTACGGTGAGAACGATCGAGGCCGGGCACTACCTCGTGGCCACCGGCGCCGCACCCTGGGTGCCGTCCGTCCCCGGACTGGCCGAGGCCGGGTACCTGACCTCGACCACGGCGATGGAACTGGACGAGGTTCCCGAATCATTGCTGGTCCTGGGCGGGGGCTATGTTGCCCTGGAAATGGCGCAGCTTTTCTCCCGGCTGGGCTCCCGGGTGACCATGCTGGTCCGTTCCCGGCTGGCCTCGCAGGAGGAACCGGAGGCATCCAAGGCCCTTGCGGGGGTGTTTGCCGACGAGGGCATCCGGGTGGTCCGGCGGGCCATGGCCGACTCCGTGGCCTCCGGCCCGGACGGGATCTCGGTGACGGCAAGCGTGGCCGGGGGCGAAGAAGTGTTCCGCGCTTCCCACATCCTCGTGGCACTTGGCCGCCGCCCAGTGACCGAGGGGCTGGACCTTGATGCCGTCGGCGTGAAGATCGGCGCCACAGGCGAGATTCTGGTCGATTCCCGTCTGGCCACGTCCAACCCGCGCATCTGGGCCGCCGGGGACGTGACCGGACATCGGGAGTTCGTTTACGTTGCCGCGGCCCACGGCGCGATGGCCGTGGACAATGCGTTCACCGACGCCCTGGCCGAGGTCGACTACCGGCACCTGCCGCGGGTCACCTTCACCAGTCCCGCCATCGGGTCGGTCGGCATGACGGAAAAGGAAGCCGTCGCTGCCGGGATCCGTTGCGAGTGCCGGGTCCTGCCCCTGGAGTACGTGCCGCGAGCCGTGGTCAACCGCGACACCCGCGGCTTCATCAAGGTTGTCGCCGAGCTCGGCACCGGACGGATCCTGGGCATTTCCGCGGTGGCCAAGGACGCCGGGGAAATCGCCGCCGCCGGCGTCTACATCCT +SEQ_LEN: 1095 +SEQ_NAME: 8D5s +--- +SEQ: GGTAGCCGCGTCACCATCCTGGCGCGCAACTCGCTGTTCTTCCGCGAAGATCCGGCCATCGGCGAGGCGCTGACCGCAGCCTTCCGCATGGAGGGCATCGACGTGCTTGAGCAGACACAAGCCAGTCAGGTGACCCACGCCAACGGCGAATTCGTACTGACCACCAACCACGGTGAACTGCGCGCCGACCAACTGTTCGTCGCCACCGGCCGCACGCCCAACACCCAAAGCCTGAACCTGGAAGCGGCGGGTGTACTGTTGGATGAACGCGGCGCCATTCAGATCGATCAGGGCATGCGCAGTAGCGCAGTGGATATCTATGCAGCCGGCGACTGCACCAACCAGCCGCAGTTCGTCTACGTCGCGGCGGCGGCTGGCACCCGTGCGGCGATCAACATGACCGGCGGCGAAGCTACGCTTAATCTCGATGCCATGCCGGCGGTGGTGTTCACCGATCCGCAGGTGGCCACCGTCGGTTACAGCGAAGCGGAAGCACAGCGCGCAGGCCTCGAAACCGACAGTCGCACGCTGAGCCTGGACAACGTGCCGCGTGCGCTGGCCAACTTCGACACGCGAGGGTTCATCAAGCTGGTCGCCGAAGCGGGTTCTGGTCGGTTGCTCGGCGTGCAGGCGGTGGCCCCGGAAGCGGGCGAGCTGATTCAGACGGCGGTGCTGGCTAT +SEQ_LEN: 680 +SEQ_NAME: SOK13 +--- +SEQ: AGGCTACAGTGAAGCAGAGGCCCAGCGCATTGGTCTGCAAACCGAAAGCCGTACGCTCACGCTCGACAATGTGCCGCGTGCACTCGCCAACTTCGATACCCGCGGCTTTATCAAGCTTGTTGCTGAGGCAGGGTCCGGACGCATTCTCGGAGTCCAGGCTGTGACACCGGAAGCAGGCGAAATCATCCAGACTGCCGCGATTGCCATCCGGGCCCGCATGACCGTCCAGGATCTGGCTAACCAGC +SEQ_LEN: 245 +SEQ_NAME: SOK15 +--- +SEQ: CGGTGCATGGTGGGCTTGCCGCCGCGCGCTTTCCCGGCCTTGGGGGCGCTGTCCAGATGGATGACTGGTCCGTATTGGCGGCGTCGAAGGACGATCTTGTCACGACGCTGCGCCAAAAAAAATATGTCGATCTGCTGCCCGCCTATGACGGTGTGAGCTATATCGAGGGCAAGGCACGCTTTGCCGATGGTGCGCTGATTGTCGGCGATGCGCCCATGAAGGTCGGCAAGGTCATATTGGCGATGGGTGCGCACGCCGCCGTGCCGCCGATTCCGGGGATGGACAGCGTGCCCTACCTAACCAGCACATCGGCGCTGGCGCTGGATCGCTTGCCCAAATCGCTGCTGGTGATCGGTGGCGGGGTGATCGGGGTAGAACTGGGACAGATGTTTTCGCGTCTGGGCGTTGATGTCACCATCTGCTGCCGAAGCCGCCTGCTCCCCGAAATGGACCCGGAAGTGAGTGCCGCGCTGAAAAACTATTTGGAAGCCGAGGGCGTGCGGGTTTGCGCAGGTGTCGGCTATCAGCGTATCGCCCAAACACAGAGCGGGGTCGAATTGACCTGCGAGGGGCATTGTGACACCGTCGCGGCGGAACAGGTGCTCATCGCCACCGGACGCCGACCCAATAGCGACGGGCTTGGGCTGGAGGAGCGCGGCATAGTGCTTGCCCGTAATGGTGGAATCGTCGTCGATGACCACCTCGAAACGTCGGTTCCAGGCATTACGCGGCGG +SEQ_LEN: 734 +SEQ_NAME: SOK19 +--- +SEQ: CGCCGAAAGCGGTGCATGGTGGGCTTGCCGCCGCGCGCTTTCCCGGCCTTGGGGGCGCTGTCCAGATGGATGACTGGTCCGTATTGGCGGCGTCGAAGGACGATCTTGTCACGACGCTGCGCCAAAAAAAATATGTCGATCTGCTGCCCGCCTATGACGGTGTGAGCTATATCGAGGGCAAGGCACGCTTTGCCGATGGTGCGCTGATTGTCGGCGATGCGCCCATGAAGGTCGGCAAGGTCATATTGGCGATGGGTGCGCACGCCGCCGTGCCGCCGATTCCGGGGATGGACAGCGTGCCCTACCTAACCAGCACATCGGCGCTGGCGCTGGATCGCTTGCCCAAATCGCTGCTGGTGATCGGTGGCGGGGTGATCGGGGTAGAACTGGGACAGATGTTTTCGCGTCTGGGCGTTGATGTCACCATCTGCTGCCGAAGCCGCCTGCTCCCCGAAATGGACCCGGAAGTGAGTGCCGCGCTGAAAAACTATTTGGAAGCCGAGGGCGTGCGGGTTTGCGCAGGTGTCGGCTATCAGCGTATCGCCCAAACACAGAGCGGGGTCGAATTGACCTGCGAGGGGCATTGTGACACCGTCGCGGCGGAACAGGTGCTCATCGCCACCGGACGCCGACCCAATAGCGACGGGCTTGGGCTGGAGGAGCGCGGCATAGTGCTTGCCCGTAATGGTGGAATCGTCGTCGATGACCACCTCGAAACGTCGGTTCCAGGCATTACGCGGCGG +SEQ_LEN: 743 +SEQ_NAME: SOK19y +--- +SEQ: AGGGGTTGCGGCTAGAAACGCCTTGGGTGTTACGGAACAAAAAATCGATCTTCGTGTTGTTCCTGGCGTAACTTTTACCAATCCTTCAATAGCTACTGTGGGACTTACCGAAGAACAAGCAAATGCAGAAGGGTATGAAGTAAAAACATCAGTCTTGCCTTTAGATGCTGTTCCAAGAGCTATTGTTAATCGGGAAACAACAGGCGTGTTTAAACTGGTAGCTGATGCGAAAACATTAAAAGTACTCGGCGTTCATATTGTGGCAGAAAATGCAGGGGATGTAATTTATGCGGCGACATTAGCTGTCAAATTTGGTCTAACAATAGAGGATCTCCGTGAAACTCTTGCTCCATATTTAACTATGGCAGAAGGGTTAAAACTAGCTGCCTTAACGTTTGATAAAGATGTATC +SEQ_LEN: 411 +SEQ_NAME: SOK1b +--- +SEQ: TCGCGCCGCGCATGTGGCTCATTTGCGCCGCGAGAGTCCGTTCGATGACGGAATGCCCGCCACGCCGCCGACCGTCCTGCGCGAGCGGCTGCTCGCGCAACAGCAAGGCCTTGTCGACGAACTGCGTCACGCCAAGTACGAAGGCATTCTGGAGAGCACACCAGCCATCACCGTGCTGCGTGGCACCGCTCGCTTCCAGGACGGCCACACGCTCAGCGTCGAACTGGTCGAGGGGGGCGGGCGCGAAGTCGCGTTCGACCGCTGCCTGATCGCTACCGGCGCCGGTGCGGCCGTGCCGCCGATTCGCGGGCTGCAAGACACCCCCTATTGGACCTCGGAGGAGGCACTGGCCAGCGCCAGTATTCCGCAACGGCTCGCCGTGATCGGCTCATCCGTGGTGGCCTTGGAGCTGGCGCAAGCCTTTGCCCGGCTGGGTAGCCGCGTCACCATCCTGGCGCGCAACTCGCTGTTCTTCCGCGAAGATCCGGCCATCGGCGAGGCGCTGACCGCAGCCTTCCGCATGGAGGGCATCGACGTGCTTGAGCAGACACAAGCCAGTCAGGTGACCCACGCCAACGGCGAATTCGTACTGACCACCAACCACGGTGAACTGCGCGCCGACCAACTGTTCGTCGCCACCGGCCGCACGCCCAACACCCAAAGCCTGAACCTGGAAGCGGCGGGTGTACTGTTGGATGAACGCGGCGCCATTCAGATCGATCAGGGCATGCGCAGTAGCGCAGTGGATATCTATGCAGCCGGCGACTGCACCAACCAGCCGCAGTTCGTCTACGTCGCGGCGGCGGCTGGCACCCGTGCGGCGATCAACATGACCGGCGGCGAAGCTACGCTTAATCTCGATGCCATGCCGGCGGTGGTGTTCACCGATCCGCAGGTGGCCACCGTCGGTTACAGCGAAGCGGAAGCACAGCGCGCAGGCCTCGAAACCGACAGTCGCACGCTGAGCCTGGACAACGTGCCGCGTGCGCTGGCCAACTTCGACACGCGAGGGTTCATCAAGCTGGTCGCCGAAGCGGGTTCTGGTCGGTTGCTCGGCGTGCAGGCGGTGGCCCCGGAAAGCGGGCGAGCTGATTCAGAACGGCGGTGCTGGCTATTCGCAACCGCATGACCGTGCAGGAGCTGGCC +SEQ_LEN: 1146 +SEQ_NAME: SOK32 +--- +SEQ: TTCGCGCCGCGCATGTGGCTCATTTGCGCCGCGAGAGTCCGTTCGATGACGGAATGCCCGCCACGCCGCCGACCGTCCTGCGCGAGCGGCTGCTCGCGCAACAGCAAGGCCTTGTCGACGAACTGCGTCACGCCAAGTACGAAGGCATTCTGGAGAGCACACCAGCCATCACCGTGCTGCGTGGCACCGCTCGCTTCCAGGACGGCCACACGCTCAGCGTCGAACTGGTCGAGGGGGGCGGGCGCGAAGTCGCGTTCGACCGCTGCCTGATCGCTACCGGCGCCGGTGCGGCCGTGCCGCCGATTCGCGGGCTGCAAGACACCCCCTATTGGACCTCGGAGGAGGCACTGGCCAGCGCCAGTATTCCGCAACGGCTCGCCGTGATCGGCTCATCCGTGGTGGCCTTGGAGCTGGCGCAAGCCTTTGCCCGGCTGGGTAGCCGCGTCACCATCCTGGCGCGCAACTCGCTGTTCTTCCGCGAAGATCCGGCCATCGGCGAGGCGCTGACCGCAGCCTTCCGCATGGAGGGCATCGACGTGCTTGAGCAGACACAAGCCAGTCAGGTGACCCACGCCAACGGCGAATTCGTACTGACCACCAACCACGGTGAACTGCGCGCCGACCAACTGTTCGTCGCCACCGGCCGCACGCCCAACACCCAAAGCCTGAACCTGGAAGCGGCGGGTGTACTGTTGGATGAACGCGGCGCCATTCAGATCGATCAGGGCATGCGCAGTAGCGCAGTGGATATCTATGCAGCCGGCGACTGCACCAACCAGCCGCAGTTCGTCTACGTCGCGGCGGCGGCTGGCACCCGTGCGGCGATCAACATGACCGGCGGCGAAGCTACGCTTAATCTCGATGCCATGCCGGCGGTGGTGTTCACCGATCCGCAGGTGGCCACCGTCGGTTACAGCGAAGCGGAAGCACAGCGCGCAGGCCTCGAAACCGACAGTCGCACGCTGAGCCTGGACAACGTGCCGCGTGCGCTGGCCAACTTCGACACGCGAGGGTTCATCAAGCTGGTCGCCGAAGCGGGTTCTGGTCGGTTGCTCGGCGTGCAGGCGGTGGCCCCGGAAAGCGGGCGAGCTGATTCAGACGGCGGTGCTGGCTATTCGCAACCGCATGACCGTGCAGGAGCTG +SEQ_LEN: 1143 +SEQ_NAME: SOK33 +--- +SEQ: ATATGATTCGCGCCGCGCATGTGGCTCATTTGCGCCGCGAGAGTCCGTTCGATGACGGAATGCCCGCCACGCCGCCGACCGTCCTGCGCGAGCGGCTGCTCGCGCAACAGCAAGGCCTTGTCGACGAACTGCGTCACGCCAAGTACGAAGGCATTCTGGAGAGCACACCAGCCATCACCGTGCTGCGTGGCACCGCTCGCTTCCAGGACGGCCACACGCTCAGCGTCGAACTGGTCGAGGGGGGCGGGCGCGAAGTCGCGTTCGACCGCTGCCTGATCGCTACCGGCGCCGGTGCGGCCGTGCCGCCGATTCGCGGGCTGCAAGACACCCCCTATTGGACCTCGGAGGAGGCACTGGCCAGCGCCAGTATTCCGCAACGGCTCGCCGTGATCGGCTCATCCGTGGTGGCCTTGGAGCTGGCGCAAGCCTTTGCCCGGCTGGGTAGCCGCGTCACCATCCTGGCGCGCAACTCGCTGTTCTTCCGCGAAGATCCGGCCATCGGCGAGGCGCTGACCGCAGCCTTCCGCATGGAGGGCATCGACGTGCTTGAGCAGACACAAGCCAGTCAGGTGACCCACGCCAACGGCGAATTCGTACTGACCACCAACCACGGTGAACTGCGCGCCGACCAACTGTTCGTCGCCACCGGCCGCACGCCCAACACCCAAAGCCTGAACCTGGAAGCGGCGGGTGTACTGTTGGATGAACGCGGCGCCATTCAGATCGATCAGGGCATGCGCAGTAGCGCAGTGGATATCTATGCAGCCGGCGACTGCACCAACCAGCCGCAGTTCGTCTACGTCGCGGCGGCGGCTGGCACCCGTGCGGCGATCAACATGACCGGCGGCGAAGCTACGCTTAATCTCGATGCCATGCCGGCGGTGGTGTTCACCGATCCGCAGGTGGCCACCGTCGGTTACAGCGAAGCGGAAGCACAGCGCGCAGGCCTCGAAACCGACAGTCGCACGCTGAGCCTGGACAACGTGCCGCGTGCGCTGGCCAACTTCGACACGCGAGGGTTCATCAAGCTGGTCGCCGAAGCGGGTTCTGGTCGGTTGCTCGGCGTGCAGGCGGTGGCCCCGGAAAGCGGGCGAGCTGATTCAGAACGGCGGTGCTGGCTATTCGCAACCGCATGACCGTGCAGGAGCTGGCCGA +SEQ_LEN: 1155 +SEQ_NAME: SOK41 +--- +SEQ: GCCGCGCATGTGGCTCATTTGCGCCGCGAGAGTCCGTTCGATGACGGAATGCCCGCCACGCCGCCGACCGTCCTGCGCGAGCGGCTGCTCGCGCAACAGCAAGGCCTTGTCGACGAACTGCGTCACGCCAAGTACGAAGGCATTCTGGAGAGCACACCAGCCATCACCGTGCTGCGTGGCACCGCTCGCTTCCAGGACGGCCACACGCTCAGCGTCGAACTGGTCGAGGGGGGCGGGCGCGAAGTCGCGTTCGACCGCTGCCTGATCGCTACCGGCGCCGGTGCGGCCGTGCCGCCGATTCGCGGGCTGCAAGACACCCCCTATTGGACCTCGGAGGAGGCACTGGCCAGCGCCAGTATTCCGCAACGGCTCGCCGTGATCGGCTCATCCGTGGTGGCCTTGGAGCTGGCGCAAGCCTTTGCCCGGCTGGGTAGCCGCGTCACCATCCTGGCGCGCAACTCGCTGTTCTTCCGCGAAGATCCGGCCATCGGCGAGGCGCTGACCGCAGCCTTCCGCATGGAGGGCATCGACGTGCTTGAGCAGACACAAGCCAGTCAGGTGACCCACGCCAACGGCGAATTCGTACTGACCACCAACCACGGTGAACTGCGCGCCGACCAACTGTTCGTCGCCACCGGCCGCACGCCCAACACCCAAAGCCTGAACCTGGAAGCGGCGGGTGTACTGTTGGATGAACGCGGCGCCATTCAGATCGATCAGGGCATGCGCAGTAGCGCAGTGGATATCTATGCAGCCGGCGACTGCACCAACCAGCCGCAGTTCGTCTACGTCGCGGCGGCGGCTGGCACCCGTGCGGCGATCAACATGACCGGCGGCGAAGCTACGCTTAATCTCGATGCCATGCCGGCGGTGGTGTTCACCGATCCGCAGGTGGCCACCGTCGGTTACAGCGAAGCGGAAGCACAGCGCGCAGGCCTCGAAACCGACAGTCGCACGCTGAGCCTGGACAACGTGCCGCGTGCGCTGGCCAACTTCGACACGCGAGGGTTCATCAAGCTGGTCGCCGAAGCGGGTTCTGGTCGGTTGCTCGGCGTGCAGGCGGTGGCCCCGGAAAGCGGGCGAGCTGATTCAGAACGGCGGTGCTGGCTATTCGCAACCGCATGACCGTGCAGGAGCTGG +SEQ_LEN: 1140 +SEQ_NAME: SOK43 +--- diff --git a/bp_test/in/blast_seq.in.2 b/bp_test/in/blast_seq.in.2 new file mode 100644 index 0000000..c413d9f --- /dev/null +++ b/bp_test/in/blast_seq.in.2 @@ -0,0 +1,4 @@ +SEQ: CCGCTTCCCCGGGGTGGCGACCTCGGCGGGCCCGGTGGACATGCCGGCCCTGATCCAGGGCAAAGCCGCGCTGGTTGAAAGCATGCGGTCGGAGAAGTACGTCGATCTGGCCGCGGACTACGGCTGGACGATGATCTCGGGGGACGCATCGTTCACCGGGACCCAGAACGCACCACTGCTCCGGGTCGCCTCCCCGGACGGTACGGTGAGAACGATCGAGGCCGGGCACTACCTCGTGGCCACCGGCGCCGCACCCTGGGTGCCGTCCGTCCCCGGACTGGCCGAGGCCGGGTACCTGACCTCGACCACGGCGATGGAACTGGACGAGGTTCCCGAATCATTGCTGGTCCTGGGCGGGGGCTATGTTGCCCTGGAAATGGCGCAGCTTTTCTCCCGGCTGGGCTCCCGGGTGACCATGCTGGTCCGTTCCCGGCTGGCCTCGCAGGAGGAACCGGAGGCATCCAAGGCCCTTGCGGGGGTGTTTGCCGACGAGGGCATCCGGGTGGTCCGGCGGGCCATGGCCGACTCCGTGGCCTCCGGCCCGGACGGGATCTCGGTGACGGCAAGCGTGGCCGGGGGCGAAGAAGTGTTCCGCGCTTCCCACATCCTCGTGGCACTTGGCCGCCGCCCAGTGACCGAGGGGCTGGACCTTGATGCCGTCGGCGTGAAGATCGGCGCCACAGGCGAGATTCTGGTCGATTCCCGTCTGGCCACGTCCAACCCGCGCATCTGGGCCGCCGGGGACGTGACCGGACATCGGGAGTTCGTTTACGTTGCCGCGGCCCACGGCGCGATGGCCGTGGACAATGCGTTCACCGACGCCCTGGCCGAGGTCGACTACCGGCACCTGCCGCGGGTCACCTTCACCAGTCCCGCCATCGGGTCGGTCGGCATGACGGAAAAGGAAGCCGTCGCTGCCGGGATCCGTTGCGAGTGCCGGGTCCTGCCCCTGGAGTACGTGCCGCGAGCCGTGGTCAACCGCGACACCCGCGGCTTCATCAAGGTTGTCGCCGAGCTCGGCACCGGACGGATCCTGGGCATTTCCGCGGTGGCCAAGGACGCCGGGGAAATCGCCGCCGCCGGCGTCTACATCCT +SEQ_LEN: 1095 +SEQ_NAME: 8D5s +--- diff --git a/bp_test/in/blast_seq.in.3 b/bp_test/in/blast_seq.in.3 new file mode 100644 index 0000000..0e1c9a3 --- /dev/null +++ b/bp_test/in/blast_seq.in.3 @@ -0,0 +1,40 @@ +SEQ: MLSEKYDLVIVGRGAAAFSAAIRASEITSGQARIAMVGNGPLGGTCVNTGCVPSKLLISISNSFQNSLKPRYPGLPSVERPPETEVIMDFIRESVHGERKKKYEDVVESYENIDLYTGTAVFTGEKEILVDSSHSLFGYNVLIATGSRPYVPGIKGLNETSYITTDSVWELKHVPASIAILGGGAVGVEIGQALSRLGSEVHIIEVSNQILPGIPADMASIIERSLREDGMVINTSTSVDEVSGGEGKKYLKLNGTNINDTLEVEEILVATGRAPNIDLALEKTGVKYSKRGIAVDEYLRTSNRKIYAAGDVVDQKYKLETLAAREGFISAENMFNHAMRTIDIFNVPFAVFCSPGYASVGYTQDEATKAGIKTEARRISTKDVASERIHANREGIINIVAEADTKEIVGVQIVAENAPELINEASAILSKRFKTDDLINTVHVFPTENEGLKLATQSFSRDITMMSCCME +SEQ_LEN: 471 +SEQ_NAME: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +--- +SEQ: MLRSEYDIIVIGGGAAGFSAVVAAAEGGASVLLVSEGPLGGTCVNFGCVPSKHVLYNLSTARKAGLKISLSEALEGARKVSETLRKEKYESLLDSLGVDYLRGRARFKAPGIVEADGREVRYRKAAIIAVGARTWRPPIPGLKEAEKAGRILDNERLFGEGPPPDMESVAVIGGRAQGVEAAQIFARSGLKTVLLQRSGRLLPRDEPEAGVYMKRVLEGDGVEVRTSARPLRVESVRGAVRIDYETPQGPASVEASYIYLATGRKPVLDGLGLENVGVRVSSDGFIVVNEKLMASPGVYAAGDCIGGIQLEPVAAREGYVAALNALGGNVEMDYTVIPRAVFTDPEFASVGLTERELARKLGVCACRTVDITQIPRARIMGYETGFVKMVVDPRTKKVAGVHMMAPQAAEAIHEAAFILKAGMTVDDVIDTIHIFPSISEGIKYAALAFYRDVSKMPCCLL +SEQ_LEN: 461 +SEQ_NAME: gi_14601420_mercuric_reductase_[Aeropyrum_pernix_K1] +--- +SEQ: MEDLVIIGYGAAGFAALIRANELGIKPVVVGYGEIGGTCVNVGCVPSKRMLRIGELYNYSSKVIGKKLFPEFFQAFQDKAEIVNSLRKEKYEDVINSYDIKLKIGKAYFTSPNAVKVNGEIIEAKKFIIATGSSPNIPNIKGLTEVGFWTNVEALSPDKTISSLAIIGGRALALEFAQMYKRLGVDTTILQRSGRILPDWEPEISLSVKNYLEENDSIPIFTNVRVKEVRKGNGGKIIVTDKGEVEADEILLATGRKPNVDLNLDAAGIELNDKGGIKVNEELRTSNPNVFAAGDVIGGPMLEALAGRQGSIAAENAIMNVHRKIDMLSVPQVVFIEPNVAKVGLTALEAVKEGYDIDQRVVKMDNIAKARILRENYGLIKMVIDKKFRNILGVQMFGKYAAEVINEAALALRFRATIDDLIDTIHVFPTMGESLRIAALAFTGDVSKMSCCV +SEQ_LEN: 453 +SEQ_NAME: gi_15899410_mercuric_reductase_(Hg(II)_reductase)_(merA)_[Sulfolobus_solfataricus_P2] +--- +SEQ: MTEMRLVIVGNGAAAFAALIRANELGVKPVMISHGIIGGTCVNVGCVPSKRMLRIGEVYDYTRKTLGKDVYPDFFKAFEDKQEIVETLRKEKYIDVLSSYDVEYVEGKAHFVSPKEVKVNGKIIEGDKFIIATGSSPQIPDIPGLKELGYWTNVEALSPNRKISSLAVIGGRALALEFAQMYKRLGVDVLILQRSKIIIPNWEPEISIAVQNYLSKEEGIYIVTDVKIKEIKKGDEGGKIIVTDKGEAEVDEILVATGRRPNVDLNLDVAGVKLNEKGGILVNETLQTTNPNIYAAGDVIGDLMLESLAGKEGSVAAENAILNSGKKIDRLSIPQVIFIEPNVARVGLTYLEAQREYSVESRVVKMSSVAKARILREPQGLIKMNVDKNTKKILGVQMFGKYAAEVINEAALAIRLRATIDDIIDTVHVFPTMAESLKLAAMSFYRDVDKMSCCVD +SEQ_LEN: 456 +SEQ_NAME: gi_15921327_mercuric_reductase_[Sulfolobus_tokodaii_str._7] +--- +SEQ: MSKEYDLLILGYGAAAFSAAIKASEITSGQASIAMVGTGPLGGTCVNVGCVPSKMLISAAKNLKYIAKPRYPGLKATYAVETGEVMDFIRMAVDEERHNKYEAVISGYENIDLYRSRAVFTGDRRVKLDDGQELFGYNVLIATGSRPSIPAVPGLANAGYITSNEFWALERIPESLVIIGSGPIGSEIGQAAARLGSRVHIVEIADQILPGISKDMAQMVMDAMASDGVEFSLSSMVKDVSVRNGKKIVRFEKNGVQHEIEADEILVATGRSPNADLDLEKTGVKYDRYGIEVDSTLRTSNRKIYAAGDVVKQRLKLETLASKEGVIAAENMFDHAGISVDLNSFPVAVFTSPEYASVGYTEDEALKAGLNYDVRSIYTTDVPKERILRNDRGMIKIVAEQGTGRIIGIQIVAENAADMINEASAILHAGMTVGDVIDTPHVFPTVNEGIKLAAQSFLRDISMMSCCME +SEQ_LEN: 469 +SEQ_NAME: gi_16082328_mercuric_reductase_[Thermoplasma_acidophilum_DSM_1728] +--- +SEQ: MYDVVVLGGGSAGVAAAVKAAQLGAKVAVVNSGPLGGTCVNVGCVPSKFLIRAAQLKRYAERPFFKGISAKVEVAFDALLQHMKEVVEELRREKYEEVLKYYDVDIIEGYGYLKDAKTVKVGEREVRGEKIIVATGARPRVPEIPGLKEAMARGMAFTNEEFFKLDHMPSSIVFIGGGAIAAELSQALARLGIEVAVIYRSSFLKYEEEIASKFVEELLANEGVRLIKAAVTAVEIRGREVEVRHSGGSVRAEALFVAAGRAPNIEPLGGLLKLGPNGGVLVNERMETSLPGVYAAGDVTGGLEGARFLENAAARQGVVAAVNAMGGNAKFNPLAVPRVVFTDPAVASVGLREEDMIKGGIGCRCRAAPIEAVAAGWTKGQTTGFIKINTYPETWKVSVKRGKIAGALVVAPEAEELINVFAMAIQLGLTVEDLIEWLPSFPSYGEALRLAALAFYTDPTKLSCCGG +SEQ_LEN: 467 +SEQ_NAME: gi_18313475_mercuric_reductase_[Pyrobaculum_aerophilum_str._IM2] +--- +SEQ: MTTLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIEAGTSSDALTTAVAGLGYEATLADAPPTDNRAGLLDKMRGWIGAADKPSGNERPLQVVVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGMPPTPPTILRERLLAQQQARVEELRHAKYEGILDGNSAITVLHGEARFKDDQSLIVSLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTALARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSLALEAAGVAVNAQGAIVIDKGMRTSSPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRLLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAVLAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFSKDVKQLSCCAG +SEQ_LEN: 561 +SEQ_NAME: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +--- +SEQ: MSTLKITGMTCDSCAVHVKDALEKVPGVQSADVSYAKGSAKLAIEVGTSPDALTAAVAGLGYRATLADAPSVSTPGGLLDKMRDLLGRNDKTGSSGALHIAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATTPTIQRTALLAQQQARVDELRHAKYEGILEGNPAITVLHGSARFKDNRNLIVQLNDGGERVVAFDRCLIATGASPAVPPIPGLKDTPYWTSTEALVSETIPKRLAVIGSSVVALELAQAFARLGAKVTILARSTLFFREDPAIGEAVTAAFRMEGIEVREHTQASQVAYINGEGDGEFVLTTAHGELRADKLLVATGRAPNTRKLALDATGVTLTPQGAIVIDPGMRTSVEHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALNLTAMPAVVFTDPQVATVGYSEAEAHHDGIKTDSRTLTLDNVPRALANFDTRGFIKLVVEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNKDVKQLSCCAG +SEQ_LEN: 564 +SEQ_NAME: gi_18466613_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +--- +SEQ: MNKFKVNISGMTCTGCEKHVESALEKIGAKNIESSYRRGEAVFELPDDIEVESAIKAIDEANYQAGEIEEVSSLENVALINEDNYDLLIIGSGAAAFSSAIKAIEYGAKVGMIERGTVGGTCVNIGCVPSKTLLRAGEINHLSKDNPFIGLQTSAGEVDLASLITQKDKLVSELRNQKYMDLIDEYNFDLIKGEAKFVDASTVEVNGTKLSAKRFLIATGASPSLPQISGLEKMDYLTSTTLLELKKIPKRLTVIGSGYIGMELGQLFHHLGSEITLMQRSERLLKEYDPEISESVEKALIEQGINLVKGATFERVEQSGEIKRVYVTVNGSREVIESDQLLVATGRKPNTDSLNLSAAGVETGKNNEILINDFGQTSNEKIYAAGDVTLGPQFVYVAAYEGGIITDNAIGGLNKKIDLSVVPAVTFTNPTVATVGLTEEQAKEKGYDVKTSVLPLDAVPRAIVNRETTGVFKLVADAETLKVLGVHIVSENAGDVIYAASLAVKFGLTIEDLTETLAPYLTMAEGLKLVALTFDKDISKLSCCAG +SEQ_LEN: 546 +SEQ_NAME: gi_22537405_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +--- +SEQ: MNKFKVNISGMTCTGCEKHVESALEKIGAKNIESSYRRGEAVFELPDDIEVESAIKAIDEANYQAGEIEEVSSLENVALINEDNYDLLIIGSGAAAFSSAIKAIEYGAKVGMIERGTVGGTCVNIGCVPSKTLLRAGEINHLSKDNPFIGLQTSAGEVDLASLITQKDKLVSELRNQKYMDLIDEYNFDLIKGEAKFVDASTVEVNGTKLSAKRFLIATGASPSLPQISGLEKMDYLTSTTLLELKKIPKRLTVIGSGYIGMELGQLFHHLGSEITLMQRSERLLKEYDPEISESVEKALIEQGINLVKGATFERVEQSGEIKRVYVTVNGSREVIESDQLLVATGRKPNTDSLNLSAAGVETGKNNEILINDFGQTSNEKIYAAGDVTLGPQFVYVAAYEGGIITDNAIGGLNKKIDLSVVPAVTFTNPTVATVGLTEEQAKEKGYDVKTSVLPLGAVPRAIVNRETTGVFKLVADAETLKVLGVHIVSENAGDVIYAASLAVKFGLTIEDLTETLAPYLTMAEGLKLVALTFDKDISKLSCCAG +SEQ_LEN: 546 +SEQ_NAME: gi_22538158_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +--- diff --git a/bp_test/in/blast_seq.in.4 b/bp_test/in/blast_seq.in.4 new file mode 100644 index 0000000..d3e8695 --- /dev/null +++ b/bp_test/in/blast_seq.in.4 @@ -0,0 +1,4 @@ +SEQ: MLSEKYDLVIVGRGAAAFSAAIRASEITSGQARIAMVGNGPLGGTCVNTGCVPSKLLISISNSFQNSLKPRYPGLPSVERPPETEVIMDFIRESVHGERKKKYEDVVESYENIDLYTGTAVFTGEKEILVDSSHSLFGYNVLIATGSRPYVPGIKGLNETSYITTDSVWELKHVPASIAILGGGAVGVEIGQALSRLGSEVHIIEVSNQILPGIPADMASIIERSLREDGMVINTSTSVDEVSGGEGKKYLKLNGTNINDTLEVEEILVATGRAPNIDLALEKTGVKYSKRGIAVDEYLRTSNRKIYAAGDVVDQKYKLETLAAREGFISAENMFNHAMRTIDIFNVPFAVFCSPGYASVGYTQDEATKAGIKTEARRISTKDVASERIHANREGIINIVAEADTKEIVGVQIVAENAPELINEASAILSKRFKTDDLINTVHVFPTENEGLKLATQSFSRDITMMSCCME +SEQ_LEN: 471 +SEQ_NAME: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +--- diff --git a/bp_test/in/create_blast_index.in.1 b/bp_test/in/create_blast_index.in.1 new file mode 100644 index 0000000..99c4464 --- /dev/null +++ b/bp_test/in/create_blast_index.in.1 @@ -0,0 +1,40 @@ +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAGGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTTACACGTGTGGAAGTAGATAAAGATGATCCACGATTCAATAACCCAACCAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_1 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAAGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTAACACGTGTGGAAGTAGATAAAGATGATCCACGATTTGATAACCCAACTAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGGCTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_2 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAGGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTTACACGTGTGGAAGTAGATAAAGATGATCCACGATTTGATAACCCAACTAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_3 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAGGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACCGTAGGCACAATCGTTACACGTGTGGAAGTAGATAAAGATGATCCACGATTCAATAACCCAACCAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGAAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_4 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAGGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTTACACGTGTGGAAGTAGATAAAGATGATCCACGATTTGATAACCCAACTAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACTTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_5 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAGGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTTACACGTGTGGAAGTAGATAAAAATGATCCACGATTTGATAACCCAACTAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_6 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAGGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTTACACGTGTGGAAGTAGATAAAGATGATCCACGATTCAATAACCCAACCAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTTGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_7 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAGGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTAACACGTGTGGAAGTAGATAAAGATGATCCACGATTTGATAACCCAACTAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_8 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAAGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTAACACGTGTGGAAGTAGATAAAGATGATCCACGATTCAATAACCCAACCAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_9 +--- +SEQ: TTATTAATCCAACAAGCTAAATCGAACAGTGACACAACGCCGGCAATGCCATTGGATACTTGTGGTGCAATGTCACAGGGTATGATAGGCTATTGGTTGGAAACTGAAATCAATCGCATTTTAACTGAAATGAATAGTGATAGAACTGTAGGCACAATCGTAACACGTGTGGAAGTAGATAAAGATGATCCACGATTCAATAACCCAACCAAACCAATTGGTCCTTTTTATACGAAAGAAGAAGTTGAAGAATTACAAAAAGAACAGCCAGACTCAGTCTTTAAAGAAGATGCAGGACGTGGTTATAGAAAAGTAGTTGCGTCACCACTACCTCAATCTATACTAGAACACCAGTTAATTCGAACTTTAGCAGACGGTAAAAATATTGTCATTGCATGCGGTGGTGGCGGTATTCCAGTTATAAAAAAAGAAAATACCTATGAAGGTGTTGAAGCG +SEQ_LEN: 456 +SEQ_NAME: arcc_10 +--- diff --git a/bp_test/in/create_blast_index.in.2 b/bp_test/in/create_blast_index.in.2 new file mode 100644 index 0000000..0e1c9a3 --- /dev/null +++ b/bp_test/in/create_blast_index.in.2 @@ -0,0 +1,40 @@ +SEQ: MLSEKYDLVIVGRGAAAFSAAIRASEITSGQARIAMVGNGPLGGTCVNTGCVPSKLLISISNSFQNSLKPRYPGLPSVERPPETEVIMDFIRESVHGERKKKYEDVVESYENIDLYTGTAVFTGEKEILVDSSHSLFGYNVLIATGSRPYVPGIKGLNETSYITTDSVWELKHVPASIAILGGGAVGVEIGQALSRLGSEVHIIEVSNQILPGIPADMASIIERSLREDGMVINTSTSVDEVSGGEGKKYLKLNGTNINDTLEVEEILVATGRAPNIDLALEKTGVKYSKRGIAVDEYLRTSNRKIYAAGDVVDQKYKLETLAAREGFISAENMFNHAMRTIDIFNVPFAVFCSPGYASVGYTQDEATKAGIKTEARRISTKDVASERIHANREGIINIVAEADTKEIVGVQIVAENAPELINEASAILSKRFKTDDLINTVHVFPTENEGLKLATQSFSRDITMMSCCME +SEQ_LEN: 471 +SEQ_NAME: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +--- +SEQ: MLRSEYDIIVIGGGAAGFSAVVAAAEGGASVLLVSEGPLGGTCVNFGCVPSKHVLYNLSTARKAGLKISLSEALEGARKVSETLRKEKYESLLDSLGVDYLRGRARFKAPGIVEADGREVRYRKAAIIAVGARTWRPPIPGLKEAEKAGRILDNERLFGEGPPPDMESVAVIGGRAQGVEAAQIFARSGLKTVLLQRSGRLLPRDEPEAGVYMKRVLEGDGVEVRTSARPLRVESVRGAVRIDYETPQGPASVEASYIYLATGRKPVLDGLGLENVGVRVSSDGFIVVNEKLMASPGVYAAGDCIGGIQLEPVAAREGYVAALNALGGNVEMDYTVIPRAVFTDPEFASVGLTERELARKLGVCACRTVDITQIPRARIMGYETGFVKMVVDPRTKKVAGVHMMAPQAAEAIHEAAFILKAGMTVDDVIDTIHIFPSISEGIKYAALAFYRDVSKMPCCLL +SEQ_LEN: 461 +SEQ_NAME: gi_14601420_mercuric_reductase_[Aeropyrum_pernix_K1] +--- +SEQ: MEDLVIIGYGAAGFAALIRANELGIKPVVVGYGEIGGTCVNVGCVPSKRMLRIGELYNYSSKVIGKKLFPEFFQAFQDKAEIVNSLRKEKYEDVINSYDIKLKIGKAYFTSPNAVKVNGEIIEAKKFIIATGSSPNIPNIKGLTEVGFWTNVEALSPDKTISSLAIIGGRALALEFAQMYKRLGVDTTILQRSGRILPDWEPEISLSVKNYLEENDSIPIFTNVRVKEVRKGNGGKIIVTDKGEVEADEILLATGRKPNVDLNLDAAGIELNDKGGIKVNEELRTSNPNVFAAGDVIGGPMLEALAGRQGSIAAENAIMNVHRKIDMLSVPQVVFIEPNVAKVGLTALEAVKEGYDIDQRVVKMDNIAKARILRENYGLIKMVIDKKFRNILGVQMFGKYAAEVINEAALALRFRATIDDLIDTIHVFPTMGESLRIAALAFTGDVSKMSCCV +SEQ_LEN: 453 +SEQ_NAME: gi_15899410_mercuric_reductase_(Hg(II)_reductase)_(merA)_[Sulfolobus_solfataricus_P2] +--- +SEQ: MTEMRLVIVGNGAAAFAALIRANELGVKPVMISHGIIGGTCVNVGCVPSKRMLRIGEVYDYTRKTLGKDVYPDFFKAFEDKQEIVETLRKEKYIDVLSSYDVEYVEGKAHFVSPKEVKVNGKIIEGDKFIIATGSSPQIPDIPGLKELGYWTNVEALSPNRKISSLAVIGGRALALEFAQMYKRLGVDVLILQRSKIIIPNWEPEISIAVQNYLSKEEGIYIVTDVKIKEIKKGDEGGKIIVTDKGEAEVDEILVATGRRPNVDLNLDVAGVKLNEKGGILVNETLQTTNPNIYAAGDVIGDLMLESLAGKEGSVAAENAILNSGKKIDRLSIPQVIFIEPNVARVGLTYLEAQREYSVESRVVKMSSVAKARILREPQGLIKMNVDKNTKKILGVQMFGKYAAEVINEAALAIRLRATIDDIIDTVHVFPTMAESLKLAAMSFYRDVDKMSCCVD +SEQ_LEN: 456 +SEQ_NAME: gi_15921327_mercuric_reductase_[Sulfolobus_tokodaii_str._7] +--- +SEQ: MSKEYDLLILGYGAAAFSAAIKASEITSGQASIAMVGTGPLGGTCVNVGCVPSKMLISAAKNLKYIAKPRYPGLKATYAVETGEVMDFIRMAVDEERHNKYEAVISGYENIDLYRSRAVFTGDRRVKLDDGQELFGYNVLIATGSRPSIPAVPGLANAGYITSNEFWALERIPESLVIIGSGPIGSEIGQAAARLGSRVHIVEIADQILPGISKDMAQMVMDAMASDGVEFSLSSMVKDVSVRNGKKIVRFEKNGVQHEIEADEILVATGRSPNADLDLEKTGVKYDRYGIEVDSTLRTSNRKIYAAGDVVKQRLKLETLASKEGVIAAENMFDHAGISVDLNSFPVAVFTSPEYASVGYTEDEALKAGLNYDVRSIYTTDVPKERILRNDRGMIKIVAEQGTGRIIGIQIVAENAADMINEASAILHAGMTVGDVIDTPHVFPTVNEGIKLAAQSFLRDISMMSCCME +SEQ_LEN: 469 +SEQ_NAME: gi_16082328_mercuric_reductase_[Thermoplasma_acidophilum_DSM_1728] +--- +SEQ: MYDVVVLGGGSAGVAAAVKAAQLGAKVAVVNSGPLGGTCVNVGCVPSKFLIRAAQLKRYAERPFFKGISAKVEVAFDALLQHMKEVVEELRREKYEEVLKYYDVDIIEGYGYLKDAKTVKVGEREVRGEKIIVATGARPRVPEIPGLKEAMARGMAFTNEEFFKLDHMPSSIVFIGGGAIAAELSQALARLGIEVAVIYRSSFLKYEEEIASKFVEELLANEGVRLIKAAVTAVEIRGREVEVRHSGGSVRAEALFVAAGRAPNIEPLGGLLKLGPNGGVLVNERMETSLPGVYAAGDVTGGLEGARFLENAAARQGVVAAVNAMGGNAKFNPLAVPRVVFTDPAVASVGLREEDMIKGGIGCRCRAAPIEAVAAGWTKGQTTGFIKINTYPETWKVSVKRGKIAGALVVAPEAEELINVFAMAIQLGLTVEDLIEWLPSFPSYGEALRLAALAFYTDPTKLSCCGG +SEQ_LEN: 467 +SEQ_NAME: gi_18313475_mercuric_reductase_[Pyrobaculum_aerophilum_str._IM2] +--- +SEQ: MTTLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIEAGTSSDALTTAVAGLGYEATLADAPPTDNRAGLLDKMRGWIGAADKPSGNERPLQVVVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGMPPTPPTILRERLLAQQQARVEELRHAKYEGILDGNSAITVLHGEARFKDDQSLIVSLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTALARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSLALEAAGVAVNAQGAIVIDKGMRTSSPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRLLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAVLAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFSKDVKQLSCCAG +SEQ_LEN: 561 +SEQ_NAME: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +--- +SEQ: MSTLKITGMTCDSCAVHVKDALEKVPGVQSADVSYAKGSAKLAIEVGTSPDALTAAVAGLGYRATLADAPSVSTPGGLLDKMRDLLGRNDKTGSSGALHIAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATTPTIQRTALLAQQQARVDELRHAKYEGILEGNPAITVLHGSARFKDNRNLIVQLNDGGERVVAFDRCLIATGASPAVPPIPGLKDTPYWTSTEALVSETIPKRLAVIGSSVVALELAQAFARLGAKVTILARSTLFFREDPAIGEAVTAAFRMEGIEVREHTQASQVAYINGEGDGEFVLTTAHGELRADKLLVATGRAPNTRKLALDATGVTLTPQGAIVIDPGMRTSVEHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALNLTAMPAVVFTDPQVATVGYSEAEAHHDGIKTDSRTLTLDNVPRALANFDTRGFIKLVVEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNKDVKQLSCCAG +SEQ_LEN: 564 +SEQ_NAME: gi_18466613_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +--- +SEQ: MNKFKVNISGMTCTGCEKHVESALEKIGAKNIESSYRRGEAVFELPDDIEVESAIKAIDEANYQAGEIEEVSSLENVALINEDNYDLLIIGSGAAAFSSAIKAIEYGAKVGMIERGTVGGTCVNIGCVPSKTLLRAGEINHLSKDNPFIGLQTSAGEVDLASLITQKDKLVSELRNQKYMDLIDEYNFDLIKGEAKFVDASTVEVNGTKLSAKRFLIATGASPSLPQISGLEKMDYLTSTTLLELKKIPKRLTVIGSGYIGMELGQLFHHLGSEITLMQRSERLLKEYDPEISESVEKALIEQGINLVKGATFERVEQSGEIKRVYVTVNGSREVIESDQLLVATGRKPNTDSLNLSAAGVETGKNNEILINDFGQTSNEKIYAAGDVTLGPQFVYVAAYEGGIITDNAIGGLNKKIDLSVVPAVTFTNPTVATVGLTEEQAKEKGYDVKTSVLPLDAVPRAIVNRETTGVFKLVADAETLKVLGVHIVSENAGDVIYAASLAVKFGLTIEDLTETLAPYLTMAEGLKLVALTFDKDISKLSCCAG +SEQ_LEN: 546 +SEQ_NAME: gi_22537405_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +--- +SEQ: MNKFKVNISGMTCTGCEKHVESALEKIGAKNIESSYRRGEAVFELPDDIEVESAIKAIDEANYQAGEIEEVSSLENVALINEDNYDLLIIGSGAAAFSSAIKAIEYGAKVGMIERGTVGGTCVNIGCVPSKTLLRAGEINHLSKDNPFIGLQTSAGEVDLASLITQKDKLVSELRNQKYMDLIDEYNFDLIKGEAKFVDASTVEVNGTKLSAKRFLIATGASPSLPQISGLEKMDYLTSTTLLELKKIPKRLTVIGSGYIGMELGQLFHHLGSEITLMQRSERLLKEYDPEISESVEKALIEQGINLVKGATFERVEQSGEIKRVYVTVNGSREVIESDQLLVATGRKPNTDSLNLSAAGVETGKNNEILINDFGQTSNEKIYAAGDVTLGPQFVYVAAYEGGIITDNAIGGLNKKIDLSVVPAVTFTNPTVATVGLTEEQAKEKGYDVKTSVLPLGAVPRAIVNRETTGVFKLVADAETLKVLGVHIVSENAGDVIYAASLAVKFGLTIEDLTETLAPYLTMAEGLKLVALTFDKDISKLSCCAG +SEQ_LEN: 546 +SEQ_NAME: gi_22538158_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +--- diff --git a/bp_test/in/read_blast_tab.in b/bp_test/in/read_blast_tab.in new file mode 100644 index 0000000..199b4d7 --- /dev/null +++ b/bp_test/in/read_blast_tab.in @@ -0,0 +1,10 @@ +# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score +M1_plasmid S.aureus_USA300_TCH1516 90.91 99 9 0 14022 14120 35975 35877 1e-27 125 +M1_plasmid S.aureus_USA300_TCH1516 90.91 99 9 0 14022 14120 76790 76888 1e-27 125 +M1_plasmid S.aureus_USA300_TCH1516 85.29 170 22 2 11031 11198 1929952 1929784 1e-27 125 +M1_plasmid S.aureus_USA300_TCH1516 97.14 70 2 0 1808 1877 1929739 1929670 6e-27 123 +M1_plasmid S.aureus_USA300_TCH1516 85.43 151 20 1 26665 26813 2265652 2265802 9e-26 119 +M1_plasmid S.aureus_USA300_TCH1516 96.97 66 2 0 1808 1873 1205204 1205139 1e-24 115 +M1_plasmid S.aureus_USA300_TCH1516 86.23 138 18 1 1910 2047 1929816 1929952 1e-24 115 +M1_plasmid S.aureus_USA300_TCH1516 93.75 64 4 0 1808 1871 443775 443712 1e-18 95.6 +M1_plasmid S.aureus_USA300_TCH1516 89.23 65 7 0 16901 16965 2680109 2680173 5e-12 73.8 diff --git a/bp_test/in/write_blast.in b/bp_test/in/write_blast.in new file mode 100644 index 0000000..23d63bb --- /dev/null +++ b/bp_test/in/write_blast.in @@ -0,0 +1,15 @@ +STRAND: - +Q_ID: M1_plasmid +ALIGN_LEN: 99 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 90.91 +E_VAL: 1e-27 +S_BEG: 35876 +Q_BEG: 14021 +MISMATCHES: 9 +BIT_SCORE: 125 +Q_END: 14119 +GAPS: 0 +S_END: 35974 +--- diff --git a/bp_test/lib/test.sh b/bp_test/lib/test.sh index c58c531..84ff16c 100755 --- a/bp_test/lib/test.sh +++ b/bp_test/lib/test.sh @@ -4,6 +4,7 @@ bp=`basename $0 | sed s/^test_//` in="$BP_DIR/bp_test/in/$bp.in" out="$BP_DIR/bp_test/out/$bp.out" tmp="$BP_TMP/$bp.out" +tmp_dir="$BP_TMP/test_tmp" log_file="$BP_TMP/test.log" function run @@ -14,6 +15,12 @@ function run eval $command > /dev/null 2>&1 } +function run_quiet +{ + local command=$1 + + eval $command > /dev/null 2>&1 +} function assert_no_diff { @@ -24,13 +31,38 @@ function assert_no_diff if [ "$diff" != "" ]; then echo_red "FAIL" - echo "FAIL" >> $log_file + log "FAIL" else echo_green "OK" - echo "OK" >> $log_file + log "OK" fi } +function assert_files_exists +{ + error=0 + + for arg in "$@"; do + if [ ! -f $arg ]; then + error=1 + fi + done + + if [ $error = 1 ]; then + echo_red "FAIL" + log "FAIL" + else + echo_green "OK" + log "OK" + fi +} + +function log +{ + local msg=$1 + + echo "$msg" >> $log_file +} function echo_green { diff --git a/bp_test/out/blast_seq.out.1 b/bp_test/out/blast_seq.out.1 new file mode 100644 index 0000000..61355e0 --- /dev/null +++ b/bp_test/out/blast_seq.out.1 @@ -0,0 +1,109 @@ +SEQ: CCGCTTCCCCGGGGTGGCGACCTCGGCGGGCCCGGTGGACATGCCGGCCCTGATCCAGGGCAAAGCCGCGCTGGTTGAAAGCATGCGGTCGGAGAAGTACGTCGATCTGGCCGCGGACTACGGCTGGACGATGATCTCGGGGGACGCATCGTTCACCGGGACCCAGAACGCACCACTGCTCCGGGTCGCCTCCCCGGACGGTACGGTGAGAACGATCGAGGCCGGGCACTACCTCGTGGCCACCGGCGCCGCACCCTGGGTGCCGTCCGTCCCCGGACTGGCCGAGGCCGGGTACCTGACCTCGACCACGGCGATGGAACTGGACGAGGTTCCCGAATCATTGCTGGTCCTGGGCGGGGGCTATGTTGCCCTGGAAATGGCGCAGCTTTTCTCCCGGCTGGGCTCCCGGGTGACCATGCTGGTCCGTTCCCGGCTGGCCTCGCAGGAGGAACCGGAGGCATCCAAGGCCCTTGCGGGGGTGTTTGCCGACGAGGGCATCCGGGTGGTCCGGCGGGCCATGGCCGACTCCGTGGCCTCCGGCCCGGACGGGATCTCGGTGACGGCAAGCGTGGCCGGGGGCGAAGAAGTGTTCCGCGCTTCCCACATCCTCGTGGCACTTGGCCGCCGCCCAGTGACCGAGGGGCTGGACCTTGATGCCGTCGGCGTGAAGATCGGCGCCACAGGCGAGATTCTGGTCGATTCCCGTCTGGCCACGTCCAACCCGCGCATCTGGGCCGCCGGGGACGTGACCGGACATCGGGAGTTCGTTTACGTTGCCGCGGCCCACGGCGCGATGGCCGTGGACAATGCGTTCACCGACGCCCTGGCCGAGGTCGACTACCGGCACCTGCCGCGGGTCACCTTCACCAGTCCCGCCATCGGGTCGGTCGGCATGACGGAAAAGGAAGCCGTCGCTGCCGGGATCCGTTGCGAGTGCCGGGTCCTGCCCCTGGAGTACGTGCCGCGAGCCGTGGTCAACCGCGACACCCGCGGCTTCATCAAGGTTGTCGCCGAGCTCGGCACCGGACGGATCCTGGGCATTTCCGCGGTGGCCAAGGACGCCGGGGAAATCGCCGCCGCCGGCGTCTACATCCT +SEQ_NAME: 8D5s +SEQ_LEN: 1095 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 1095 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.0 +S_BEG: 0 +Q_BEG: 0 +MISMATCHES: 0 +BIT_SCORE: 2171 +Q_END: 1094 +GAPS: 0 +S_END: 1094 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.45 +S_BEG: 1009 +Q_BEG: 1009 +MISMATCHES: 0 +BIT_SCORE: 24.3 +Q_END: 1020 +GAPS: 0 +S_END: 1020 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 23 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 91.30 +E_VAL: 0.007 +S_BEG: 97 +Q_BEG: 985 +MISMATCHES: 2 +BIT_SCORE: 30.2 +Q_END: 1007 +GAPS: 0 +S_END: 119 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 1.8 +S_BEG: 272 +Q_BEG: 240 +MISMATCHES: 0 +BIT_SCORE: 22.3 +Q_END: 250 +GAPS: 0 +S_END: 282 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 1.8 +S_BEG: 283 +Q_BEG: 240 +MISMATCHES: 0 +BIT_SCORE: 22.3 +Q_END: 250 +GAPS: 0 +S_END: 293 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 1.8 +S_BEG: 277 +Q_BEG: 240 +MISMATCHES: 0 +BIT_SCORE: 22.3 +Q_END: 250 +GAPS: 0 +S_END: 287 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 1.8 +S_BEG: 276 +Q_BEG: 240 +MISMATCHES: 0 +BIT_SCORE: 22.3 +Q_END: 250 +GAPS: 0 +S_END: 286 +--- diff --git a/bp_test/out/blast_seq.out.2 b/bp_test/out/blast_seq.out.2 new file mode 100644 index 0000000..ab969c1 --- /dev/null +++ b/bp_test/out/blast_seq.out.2 @@ -0,0 +1,349 @@ +SEQ: CCGCTTCCCCGGGGTGGCGACCTCGGCGGGCCCGGTGGACATGCCGGCCCTGATCCAGGGCAAAGCCGCGCTGGTTGAAAGCATGCGGTCGGAGAAGTACGTCGATCTGGCCGCGGACTACGGCTGGACGATGATCTCGGGGGACGCATCGTTCACCGGGACCCAGAACGCACCACTGCTCCGGGTCGCCTCCCCGGACGGTACGGTGAGAACGATCGAGGCCGGGCACTACCTCGTGGCCACCGGCGCCGCACCCTGGGTGCCGTCCGTCCCCGGACTGGCCGAGGCCGGGTACCTGACCTCGACCACGGCGATGGAACTGGACGAGGTTCCCGAATCATTGCTGGTCCTGGGCGGGGGCTATGTTGCCCTGGAAATGGCGCAGCTTTTCTCCCGGCTGGGCTCCCGGGTGACCATGCTGGTCCGTTCCCGGCTGGCCTCGCAGGAGGAACCGGAGGCATCCAAGGCCCTTGCGGGGGTGTTTGCCGACGAGGGCATCCGGGTGGTCCGGCGGGCCATGGCCGACTCCGTGGCCTCCGGCCCGGACGGGATCTCGGTGACGGCAAGCGTGGCCGGGGGCGAAGAAGTGTTCCGCGCTTCCCACATCCTCGTGGCACTTGGCCGCCGCCCAGTGACCGAGGGGCTGGACCTTGATGCCGTCGGCGTGAAGATCGGCGCCACAGGCGAGATTCTGGTCGATTCCCGTCTGGCCACGTCCAACCCGCGCATCTGGGCCGCCGGGGACGTGACCGGACATCGGGAGTTCGTTTACGTTGCCGCGGCCCACGGCGCGATGGCCGTGGACAATGCGTTCACCGACGCCCTGGCCGAGGTCGACTACCGGCACCTGCCGCGGGTCACCTTCACCAGTCCCGCCATCGGGTCGGTCGGCATGACGGAAAAGGAAGCCGTCGCTGCCGGGATCCGTTGCGAGTGCCGGGTCCTGCCCCTGGAGTACGTGCCGCGAGCCGTGGTCAACCGCGACACCCGCGGCTTCATCAAGGTTGTCGCCGAGCTCGGCACCGGACGGATCCTGGGCATTTCCGCGGTGGCCAAGGACGCCGGGGAAATCGCCGCCGCCGGCGTCTACATCCT +SEQ_NAME: 8D5s +SEQ_LEN: 1095 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 360 +S_ID: gi_22537405_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +REC_TYPE: BLAST +IDENT: 40.56 +E_VAL: 6e-76 +S_BEG: 147 +Q_BEG: 4 +MISMATCHES: 213 +BIT_SCORE: 270 +Q_END: 1080 +GAPS: 3 +S_END: 498 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: gi_22537405_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +REC_TYPE: BLAST +IDENT: 47.37 +E_VAL: 7.4 +S_BEG: 116 +Q_BEG: 634 +MISMATCHES: 10 +BIT_SCORE: 17.7 +Q_END: 578 +GAPS: 0 +S_END: 134 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 360 +S_ID: gi_22538158_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +REC_TYPE: BLAST +IDENT: 40.56 +E_VAL: 2e-75 +S_BEG: 147 +Q_BEG: 4 +MISMATCHES: 213 +BIT_SCORE: 268 +Q_END: 1080 +GAPS: 3 +S_END: 498 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: gi_22538158_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +REC_TYPE: BLAST +IDENT: 47.37 +E_VAL: 7.4 +S_BEG: 116 +Q_BEG: 634 +MISMATCHES: 10 +BIT_SCORE: 17.7 +Q_END: 578 +GAPS: 0 +S_END: 134 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 347 +S_ID: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 43.80 +E_VAL: 3e-69 +S_BEG: 177 +Q_BEG: 49 +MISMATCHES: 194 +BIT_SCORE: 248 +Q_END: 1086 +GAPS: 5 +S_END: 515 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 1.1 +S_BEG: 156 +Q_BEG: 391 +MISMATCHES: 12 +BIT_SCORE: 20.4 +Q_END: 329 +GAPS: 1 +S_END: 175 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 56.25 +E_VAL: 1.1 +S_BEG: 156 +Q_BEG: 490 +MISMATCHES: 7 +BIT_SCORE: 20.4 +Q_END: 443 +GAPS: 1 +S_END: 170 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 59 +S_ID: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 27.12 +E_VAL: 2.0 +S_BEG: 25 +Q_BEG: 1025 +MISMATCHES: 43 +BIT_SCORE: 19.6 +Q_END: 849 +GAPS: 0 +S_END: 83 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 9.7 +S_BEG: 243 +Q_BEG: 457 +MISMATCHES: 10 +BIT_SCORE: 17.3 +Q_END: 410 +GAPS: 0 +S_END: 258 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 357 +S_ID: gi_18466613_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 41.46 +E_VAL: 1e-66 +S_BEG: 163 +Q_BEG: 10 +MISMATCHES: 206 +BIT_SCORE: 239 +Q_END: 1071 +GAPS: 5 +S_END: 513 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 102 +S_ID: gi_18466613_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 23.53 +E_VAL: 0.39 +S_BEG: 29 +Q_BEG: 136 +MISMATCHES: 76 +BIT_SCORE: 21.9 +Q_END: 435 +GAPS: 2 +S_END: 130 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 341 +S_ID: gi_15921327_mercuric_reductase_[Sulfolobus_tokodaii_str._7] +REC_TYPE: BLAST +IDENT: 34.60 +E_VAL: 3e-51 +S_BEG: 78 +Q_BEG: 55 +MISMATCHES: 221 +BIT_SCORE: 188 +Q_END: 1071 +GAPS: 6 +S_END: 405 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 363 +S_ID: gi_16082328_mercuric_reductase_[Thermoplasma_acidophilum_DSM_1728] +REC_TYPE: BLAST +IDENT: 36.64 +E_VAL: 6e-50 +S_BEG: 69 +Q_BEG: 1 +MISMATCHES: 224 +BIT_SCORE: 184 +Q_END: 1071 +GAPS: 9 +S_END: 418 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 39 +S_ID: gi_16082328_mercuric_reductase_[Thermoplasma_acidophilum_DSM_1728] +REC_TYPE: BLAST +IDENT: 35.90 +E_VAL: 4.4 +S_BEG: 10 +Q_BEG: 372 +MISMATCHES: 24 +BIT_SCORE: 18.5 +Q_END: 485 +GAPS: 2 +S_END: 44 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 341 +S_ID: gi_15899410_mercuric_reductase_(Hg(II)_reductase)_(merA)_[Sulfolobus_solfataricus_P2] +REC_TYPE: BLAST +IDENT: 33.43 +E_VAL: 4e-48 +S_BEG: 76 +Q_BEG: 55 +MISMATCHES: 225 +BIT_SCORE: 177 +Q_END: 1071 +GAPS: 6 +S_END: 403 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 371 +S_ID: gi_18313475_mercuric_reductase_[Pyrobaculum_aerophilum_str._IM2] +REC_TYPE: BLAST +IDENT: 34.23 +E_VAL: 1e-46 +S_BEG: 64 +Q_BEG: 4 +MISMATCHES: 229 +BIT_SCORE: 172 +Q_END: 1071 +GAPS: 10 +S_END: 416 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 7 +S_ID: gi_18313475_mercuric_reductase_[Pyrobaculum_aerophilum_str._IM2] +REC_TYPE: BLAST +IDENT: 71.43 +E_VAL: 9.7 +S_BEG: 32 +Q_BEG: 465 +MISMATCHES: 2 +BIT_SCORE: 17.3 +Q_END: 485 +GAPS: 0 +S_END: 38 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 361 +S_ID: gi_14601420_mercuric_reductase_[Aeropyrum_pernix_K1] +REC_TYPE: BLAST +IDENT: 32.96 +E_VAL: 1e-44 +S_BEG: 67 +Q_BEG: 34 +MISMATCHES: 234 +BIT_SCORE: 166 +Q_END: 1092 +GAPS: 9 +S_END: 417 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 32 +S_ID: gi_14601420_mercuric_reductase_[Aeropyrum_pernix_K1] +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 0.52 +S_BEG: 11 +Q_BEG: 408 +MISMATCHES: 14 +BIT_SCORE: 21.6 +Q_END: 485 +GAPS: 1 +S_END: 42 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: gi_14601420_mercuric_reductase_[Aeropyrum_pernix_K1] +REC_TYPE: BLAST +IDENT: 45.45 +E_VAL: 4.3 +S_BEG: 134 +Q_BEG: 463 +MISMATCHES: 6 +BIT_SCORE: 18.5 +Q_END: 431 +GAPS: 0 +S_END: 144 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 360 +S_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +REC_TYPE: BLAST +IDENT: 30.83 +E_VAL: 1e-44 +S_BEG: 70 +Q_BEG: 1 +MISMATCHES: 246 +BIT_SCORE: 166 +Q_END: 1071 +GAPS: 6 +S_END: 420 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 38 +S_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +REC_TYPE: BLAST +IDENT: 34.21 +E_VAL: 3.3 +S_BEG: 11 +Q_BEG: 372 +MISMATCHES: 25 +BIT_SCORE: 18.9 +Q_END: 485 +GAPS: 1 +S_END: 45 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 13 +S_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +REC_TYPE: BLAST +IDENT: 46.15 +E_VAL: 5.7 +S_BEG: 69 +Q_BEG: 1043 +MISMATCHES: 7 +BIT_SCORE: 18.1 +Q_END: 1081 +GAPS: 0 +S_END: 81 +--- diff --git a/bp_test/out/blast_seq.out.3 b/bp_test/out/blast_seq.out.3 new file mode 100644 index 0000000..dff40ce --- /dev/null +++ b/bp_test/out/blast_seq.out.3 @@ -0,0 +1,154 @@ +SEQ: MLSEKYDLVIVGRGAAAFSAAIRASEITSGQARIAMVGNGPLGGTCVNTGCVPSKLLISISNSFQNSLKPRYPGLPSVERPPETEVIMDFIRESVHGERKKKYEDVVESYENIDLYTGTAVFTGEKEILVDSSHSLFGYNVLIATGSRPYVPGIKGLNETSYITTDSVWELKHVPASIAILGGGAVGVEIGQALSRLGSEVHIIEVSNQILPGIPADMASIIERSLREDGMVINTSTSVDEVSGGEGKKYLKLNGTNINDTLEVEEILVATGRAPNIDLALEKTGVKYSKRGIAVDEYLRTSNRKIYAAGDVVDQKYKLETLAAREGFISAENMFNHAMRTIDIFNVPFAVFCSPGYASVGYTQDEATKAGIKTEARRISTKDVASERIHANREGIINIVAEADTKEIVGVQIVAENAPELINEASAILSKRFKTDDLINTVHVFPTENEGLKLATQSFSRDITMMSCCME +SEQ_NAME: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +SEQ_LEN: 471 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 363 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 31.13 +E_VAL: 9e-44 +S_BEG: 1 +Q_BEG: 70 +MISMATCHES: 238 +BIT_SCORE: 162 +Q_END: 420 +GAPS: 7 +S_END: 1071 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 323 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 33.44 +E_VAL: 4e-39 +S_BEG: 131 +Q_BEG: 98 +MISMATCHES: 209 +BIT_SCORE: 147 +Q_END: 414 +GAPS: 8 +S_END: 1078 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 323 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 33.44 +E_VAL: 4e-39 +S_BEG: 120 +Q_BEG: 98 +MISMATCHES: 209 +BIT_SCORE: 147 +Q_END: 414 +GAPS: 8 +S_END: 1067 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 323 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 33.44 +E_VAL: 5e-39 +S_BEG: 124 +Q_BEG: 98 +MISMATCHES: 209 +BIT_SCORE: 147 +Q_END: 414 +GAPS: 8 +S_END: 1071 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 323 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 33.44 +E_VAL: 6e-39 +S_BEG: 125 +Q_BEG: 98 +MISMATCHES: 209 +BIT_SCORE: 147 +Q_END: 414 +GAPS: 8 +S_END: 1072 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 234 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 30.34 +E_VAL: 2e-28 +S_BEG: 26 +Q_BEG: 70 +MISMATCHES: 161 +BIT_SCORE: 112 +Q_END: 301 +GAPS: 5 +S_END: 712 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 234 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 30.34 +E_VAL: 2e-28 +S_BEG: 35 +Q_BEG: 70 +MISMATCHES: 161 +BIT_SCORE: 112 +Q_END: 301 +GAPS: 5 +S_END: 721 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 230 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 33.91 +E_VAL: 2e-24 +S_BEG: 0 +Q_BEG: 197 +MISMATCHES: 150 +BIT_SCORE: 98.6 +Q_END: 424 +GAPS: 6 +S_END: 668 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 135 +S_ID: SOK1b +REC_TYPE: BLAST +IDENT: 31.11 +E_VAL: 1e-16 +S_BEG: 4 +Q_BEG: 328 +MISMATCHES: 93 +BIT_SCORE: 72.8 +Q_END: 462 +GAPS: 0 +S_END: 408 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 80 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 35.00 +E_VAL: 3e-10 +S_BEG: 1 +Q_BEG: 360 +MISMATCHES: 52 +BIT_SCORE: 52.0 +Q_END: 439 +GAPS: 0 +S_END: 240 +--- diff --git a/bp_test/out/blast_seq.out.4 b/bp_test/out/blast_seq.out.4 new file mode 100644 index 0000000..1b6205c --- /dev/null +++ b/bp_test/out/blast_seq.out.4 @@ -0,0 +1,184 @@ +SEQ: MLSEKYDLVIVGRGAAAFSAAIRASEITSGQARIAMVGNGPLGGTCVNTGCVPSKLLISISNSFQNSLKPRYPGLPSVERPPETEVIMDFIRESVHGERKKKYEDVVESYENIDLYTGTAVFTGEKEILVDSSHSLFGYNVLIATGSRPYVPGIKGLNETSYITTDSVWELKHVPASIAILGGGAVGVEIGQALSRLGSEVHIIEVSNQILPGIPADMASIIERSLREDGMVINTSTSVDEVSGGEGKKYLKLNGTNINDTLEVEEILVATGRAPNIDLALEKTGVKYSKRGIAVDEYLRTSNRKIYAAGDVVDQKYKLETLAAREGFISAENMFNHAMRTIDIFNVPFAVFCSPGYASVGYTQDEATKAGIKTEARRISTKDVASERIHANREGIINIVAEADTKEIVGVQIVAENAPELINEASAILSKRFKTDDLINTVHVFPTENEGLKLATQSFSRDITMMSCCME +SEQ_NAME: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +SEQ_LEN: 471 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 471 +S_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.0 +S_BEG: 0 +Q_BEG: 0 +MISMATCHES: 0 +BIT_SCORE: 961 +Q_END: 470 +GAPS: 0 +S_END: 470 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 470 +S_ID: gi_16082328_mercuric_reductase_[Thermoplasma_acidophilum_DSM_1728] +REC_TYPE: BLAST +IDENT: 58.94 +E_VAL: 3e-157 +S_BEG: 0 +Q_BEG: 1 +MISMATCHES: 192 +BIT_SCORE: 540 +Q_END: 470 +GAPS: 1 +S_END: 468 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 468 +S_ID: gi_15899410_mercuric_reductase_(Hg(II)_reductase)_(merA)_[Sulfolobus_solfataricus_P2] +REC_TYPE: BLAST +IDENT: 40.17 +E_VAL: 2e-83 +S_BEG: 2 +Q_BEG: 6 +MISMATCHES: 259 +BIT_SCORE: 295 +Q_END: 469 +GAPS: 9 +S_END: 452 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 473 +S_ID: gi_15921327_mercuric_reductase_[Sulfolobus_tokodaii_str._7] +REC_TYPE: BLAST +IDENT: 39.11 +E_VAL: 6e-78 +S_BEG: 5 +Q_BEG: 7 +MISMATCHES: 257 +BIT_SCORE: 277 +Q_END: 470 +GAPS: 11 +S_END: 455 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 474 +S_ID: gi_22538158_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +REC_TYPE: BLAST +IDENT: 35.65 +E_VAL: 6e-72 +S_BEG: 82 +Q_BEG: 3 +MISMATCHES: 285 +BIT_SCORE: 257 +Q_END: 468 +GAPS: 12 +S_END: 543 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 34 +S_ID: gi_22538158_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +REC_TYPE: BLAST +IDENT: 38.24 +E_VAL: 3.2 +S_BEG: 10 +Q_BEG: 267 +MISMATCHES: 17 +BIT_SCORE: 19.2 +Q_END: 296 +GAPS: 1 +S_END: 43 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 470 +S_ID: gi_22537405_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +REC_TYPE: BLAST +IDENT: 34.68 +E_VAL: 6e-72 +S_BEG: 82 +Q_BEG: 3 +MISMATCHES: 295 +BIT_SCORE: 257 +Q_END: 468 +GAPS: 9 +S_END: 543 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 34 +S_ID: gi_22537405_mercuric_reductase_[Streptococcus_agalactiae_2603V/R] +REC_TYPE: BLAST +IDENT: 38.24 +E_VAL: 3.3 +S_BEG: 10 +Q_BEG: 267 +MISMATCHES: 17 +BIT_SCORE: 19.2 +Q_END: 296 +GAPS: 1 +S_END: 43 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 480 +S_ID: gi_14601420_mercuric_reductase_[Aeropyrum_pernix_K1] +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 2e-61 +S_BEG: 0 +Q_BEG: 0 +MISMATCHES: 290 +BIT_SCORE: 222 +Q_END: 469 +GAPS: 13 +S_END: 459 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 451 +S_ID: gi_18466613_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 33.26 +E_VAL: 2e-60 +S_BEG: 120 +Q_BEG: 31 +MISMATCHES: 279 +BIT_SCORE: 219 +Q_END: 468 +GAPS: 11 +S_END: 561 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 447 +S_ID: gi_18466556_putative_mercuric_reductase_[Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18] +REC_TYPE: BLAST +IDENT: 32.66 +E_VAL: 8e-58 +S_BEG: 121 +Q_BEG: 31 +MISMATCHES: 283 +BIT_SCORE: 210 +Q_END: 468 +GAPS: 10 +S_END: 558 +--- +STRAND: + +Q_ID: gi_13541082_mercuric_reductase_[Thermoplasma_volcanium_GSS1] +ALIGN_LEN: 456 +S_ID: gi_18313475_mercuric_reductase_[Pyrobaculum_aerophilum_str._IM2] +REC_TYPE: BLAST +IDENT: 33.11 +E_VAL: 2e-57 +S_BEG: 24 +Q_BEG: 31 +MISMATCHES: 272 +BIT_SCORE: 209 +Q_END: 468 +GAPS: 13 +S_END: 464 +--- diff --git a/bp_test/out/blast_seq.out.5 b/bp_test/out/blast_seq.out.5 new file mode 100644 index 0000000..995512d --- /dev/null +++ b/bp_test/out/blast_seq.out.5 @@ -0,0 +1,7054 @@ +SEQ: CCGCTTCCCCGGGGTGGCGACCTCGGCGGGCCCGGTGGACATGCCGGCCCTGATCCAGGGCAAAGCCGCGCTGGTTGAAAGCATGCGGTCGGAGAAGTACGTCGATCTGGCCGCGGACTACGGCTGGACGATGATCTCGGGGGACGCATCGTTCACCGGGACCCAGAACGCACCACTGCTCCGGGTCGCCTCCCCGGACGGTACGGTGAGAACGATCGAGGCCGGGCACTACCTCGTGGCCACCGGCGCCGCACCCTGGGTGCCGTCCGTCCCCGGACTGGCCGAGGCCGGGTACCTGACCTCGACCACGGCGATGGAACTGGACGAGGTTCCCGAATCATTGCTGGTCCTGGGCGGGGGCTATGTTGCCCTGGAAATGGCGCAGCTTTTCTCCCGGCTGGGCTCCCGGGTGACCATGCTGGTCCGTTCCCGGCTGGCCTCGCAGGAGGAACCGGAGGCATCCAAGGCCCTTGCGGGGGTGTTTGCCGACGAGGGCATCCGGGTGGTCCGGCGGGCCATGGCCGACTCCGTGGCCTCCGGCCCGGACGGGATCTCGGTGACGGCAAGCGTGGCCGGGGGCGAAGAAGTGTTCCGCGCTTCCCACATCCTCGTGGCACTTGGCCGCCGCCCAGTGACCGAGGGGCTGGACCTTGATGCCGTCGGCGTGAAGATCGGCGCCACAGGCGAGATTCTGGTCGATTCCCGTCTGGCCACGTCCAACCCGCGCATCTGGGCCGCCGGGGACGTGACCGGACATCGGGAGTTCGTTTACGTTGCCGCGGCCCACGGCGCGATGGCCGTGGACAATGCGTTCACCGACGCCCTGGCCGAGGTCGACTACCGGCACCTGCCGCGGGTCACCTTCACCAGTCCCGCCATCGGGTCGGTCGGCATGACGGAAAAGGAAGCCGTCGCTGCCGGGATCCGTTGCGAGTGCCGGGTCCTGCCCCTGGAGTACGTGCCGCGAGCCGTGGTCAACCGCGACACCCGCGGCTTCATCAAGGTTGTCGCCGAGCTCGGCACCGGACGGATCCTGGGCATTTCCGCGGTGGCCAAGGACGCCGGGGAAATCGCCGCCGCCGGCGTCTACATCCT +SEQ_NAME: 8D5s +SEQ_LEN: 1095 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 364 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.0 +S_BEG: 2 +Q_BEG: 2 +MISMATCHES: 0 +BIT_SCORE: 968 +Q_END: 1093 +GAPS: 0 +S_END: 1093 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 364 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.0 +S_BEG: 2 +Q_BEG: 1093 +MISMATCHES: 0 +BIT_SCORE: 943 +Q_END: 2 +GAPS: 0 +S_END: 1093 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 365 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.0 +S_BEG: 0 +Q_BEG: 0 +MISMATCHES: 0 +BIT_SCORE: 939 +Q_END: 1094 +GAPS: 0 +S_END: 1094 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 364 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.0 +S_BEG: 1 +Q_BEG: 1092 +MISMATCHES: 0 +BIT_SCORE: 930 +Q_END: 1 +GAPS: 0 +S_END: 1092 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 364 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.0 +S_BEG: 1 +Q_BEG: 1 +MISMATCHES: 0 +BIT_SCORE: 833 +Q_END: 1092 +GAPS: 0 +S_END: 1092 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 365 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 0.0 +S_BEG: 0 +Q_BEG: 1094 +MISMATCHES: 0 +BIT_SCORE: 830 +Q_END: 0 +GAPS: 0 +S_END: 1094 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 8e-08 +S_BEG: 692 +Q_BEG: 1034 +MISMATCHES: 10 +BIT_SCORE: 33.6 +Q_END: 1087 +GAPS: 0 +S_END: 745 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 8e-08 +S_BEG: 1034 +Q_BEG: 692 +MISMATCHES: 10 +BIT_SCORE: 33.6 +Q_END: 745 +GAPS: 0 +S_END: 1087 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 63.64 +E_VAL: 8e-08 +S_BEG: 521 +Q_BEG: 815 +MISMATCHES: 4 +BIT_SCORE: 33.6 +Q_END: 847 +GAPS: 0 +S_END: 553 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 63.64 +E_VAL: 8e-08 +S_BEG: 815 +Q_BEG: 521 +MISMATCHES: 4 +BIT_SCORE: 33.6 +Q_END: 553 +GAPS: 0 +S_END: 847 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 57.14 +E_VAL: 8e-08 +S_BEG: 401 +Q_BEG: 674 +MISMATCHES: 6 +BIT_SCORE: 33.6 +Q_END: 715 +GAPS: 0 +S_END: 442 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 57.14 +E_VAL: 8e-08 +S_BEG: 674 +Q_BEG: 401 +MISMATCHES: 6 +BIT_SCORE: 33.6 +Q_END: 442 +GAPS: 0 +S_END: 715 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 17 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 52.94 +E_VAL: 8e-08 +S_BEG: 24 +Q_BEG: 399 +MISMATCHES: 8 +BIT_SCORE: 33.6 +Q_END: 449 +GAPS: 0 +S_END: 74 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 17 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 52.94 +E_VAL: 8e-08 +S_BEG: 399 +Q_BEG: 24 +MISMATCHES: 8 +BIT_SCORE: 33.6 +Q_END: 74 +GAPS: 0 +S_END: 449 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 66.67 +E_VAL: 8e-08 +S_BEG: 221 +Q_BEG: 515 +MISMATCHES: 3 +BIT_SCORE: 33.6 +Q_END: 541 +GAPS: 0 +S_END: 247 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 66.67 +E_VAL: 8e-08 +S_BEG: 515 +Q_BEG: 221 +MISMATCHES: 3 +BIT_SCORE: 33.6 +Q_END: 247 +GAPS: 0 +S_END: 541 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 60 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 35.00 +E_VAL: 1e-06 +S_BEG: 564 +Q_BEG: 769 +MISMATCHES: 39 +BIT_SCORE: 33.6 +Q_END: 590 +GAPS: 0 +S_END: 743 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 47.37 +E_VAL: 1e-06 +S_BEG: 981 +Q_BEG: 483 +MISMATCHES: 10 +BIT_SCORE: 33.6 +Q_END: 427 +GAPS: 0 +S_END: 1037 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 1e-06 +S_BEG: 1020 +Q_BEG: 84 +MISMATCHES: 15 +BIT_SCORE: 33.6 +Q_END: 10 +GAPS: 0 +S_END: 1094 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 1e-06 +S_BEG: 12 +Q_BEG: 1077 +MISMATCHES: 5 +BIT_SCORE: 33.6 +Q_END: 1042 +GAPS: 0 +S_END: 47 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 8 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 62.50 +E_VAL: 1e-06 +S_BEG: 248 +Q_BEG: 904 +MISMATCHES: 3 +BIT_SCORE: 33.6 +Q_END: 881 +GAPS: 0 +S_END: 271 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 60 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 35.00 +E_VAL: 1e-06 +S_BEG: 590 +Q_BEG: 564 +MISMATCHES: 39 +BIT_SCORE: 33.6 +Q_END: 743 +GAPS: 0 +S_END: 769 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 47.37 +E_VAL: 1e-06 +S_BEG: 427 +Q_BEG: 981 +MISMATCHES: 10 +BIT_SCORE: 33.6 +Q_END: 1037 +GAPS: 0 +S_END: 483 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 1e-06 +S_BEG: 10 +Q_BEG: 1020 +MISMATCHES: 15 +BIT_SCORE: 33.6 +Q_END: 1094 +GAPS: 0 +S_END: 84 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 1e-06 +S_BEG: 1042 +Q_BEG: 12 +MISMATCHES: 5 +BIT_SCORE: 33.6 +Q_END: 47 +GAPS: 0 +S_END: 1077 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 8 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 62.50 +E_VAL: 1e-06 +S_BEG: 881 +Q_BEG: 248 +MISMATCHES: 3 +BIT_SCORE: 33.6 +Q_END: 271 +GAPS: 0 +S_END: 904 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 20 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 1e-05 +S_BEG: 434 +Q_BEG: 73 +MISMATCHES: 10 +BIT_SCORE: 33.6 +Q_END: 14 +GAPS: 0 +S_END: 493 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 20 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 1e-05 +S_BEG: 14 +Q_BEG: 493 +MISMATCHES: 10 +BIT_SCORE: 33.6 +Q_END: 434 +GAPS: 0 +S_END: 73 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 20 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 1e-05 +S_BEG: 527 +Q_BEG: 340 +MISMATCHES: 10 +BIT_SCORE: 33.6 +Q_END: 281 +GAPS: 0 +S_END: 586 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 20 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 1e-05 +S_BEG: 281 +Q_BEG: 586 +MISMATCHES: 10 +BIT_SCORE: 33.6 +Q_END: 527 +GAPS: 0 +S_END: 340 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 26 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 42.31 +E_VAL: 1e-05 +S_BEG: 758 +Q_BEG: 553 +MISMATCHES: 15 +BIT_SCORE: 33.6 +Q_END: 476 +GAPS: 0 +S_END: 835 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 26 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 42.31 +E_VAL: 1e-05 +S_BEG: 476 +Q_BEG: 835 +MISMATCHES: 15 +BIT_SCORE: 33.6 +Q_END: 758 +GAPS: 0 +S_END: 553 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 28 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 32.14 +E_VAL: 1e-05 +S_BEG: 573 +Q_BEG: 437 +MISMATCHES: 19 +BIT_SCORE: 33.6 +Q_END: 354 +GAPS: 0 +S_END: 656 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 28 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 32.14 +E_VAL: 1e-05 +S_BEG: 354 +Q_BEG: 656 +MISMATCHES: 19 +BIT_SCORE: 33.6 +Q_END: 573 +GAPS: 0 +S_END: 437 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 72 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 31.94 +E_VAL: 1e-05 +S_BEG: 141 +Q_BEG: 349 +MISMATCHES: 49 +BIT_SCORE: 33.6 +Q_END: 134 +GAPS: 0 +S_END: 356 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 1e-05 +S_BEG: 366 +Q_BEG: 61 +MISMATCHES: 4 +BIT_SCORE: 33.6 +Q_END: 32 +GAPS: 0 +S_END: 395 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 55.56 +E_VAL: 1e-05 +S_BEG: 36 +Q_BEG: 414 +MISMATCHES: 4 +BIT_SCORE: 33.6 +Q_END: 388 +GAPS: 0 +S_END: 62 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 72 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 31.94 +E_VAL: 1e-05 +S_BEG: 134 +Q_BEG: 141 +MISMATCHES: 49 +BIT_SCORE: 33.6 +Q_END: 356 +GAPS: 0 +S_END: 349 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 1e-05 +S_BEG: 32 +Q_BEG: 366 +MISMATCHES: 4 +BIT_SCORE: 25.8 +Q_END: 395 +GAPS: 0 +S_END: 61 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 55.56 +E_VAL: 1e-05 +S_BEG: 388 +Q_BEG: 36 +MISMATCHES: 4 +BIT_SCORE: 25.8 +Q_END: 62 +GAPS: 0 +S_END: 414 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 57.89 +E_VAL: 2e-04 +S_BEG: 555 +Q_BEG: 607 +MISMATCHES: 8 +BIT_SCORE: 25.8 +Q_END: 551 +GAPS: 0 +S_END: 611 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 26 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 38.46 +E_VAL: 2e-04 +S_BEG: 17 +Q_BEG: 736 +MISMATCHES: 16 +BIT_SCORE: 25.8 +Q_END: 659 +GAPS: 0 +S_END: 94 +--- +STRAND: + +Q_ID: 8D5s 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334 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 28 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 2.5 +S_BEG: 427 +Q_BEG: 428 +MISMATCHES: 18 +BIT_SCORE: 19.4 +Q_END: 511 +GAPS: 0 +S_END: 510 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 3.5 +S_BEG: 345 +Q_BEG: 469 +MISMATCHES: 28 +BIT_SCORE: 18.9 +Q_END: 344 +GAPS: 0 +S_END: 470 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 13 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 46.15 +E_VAL: 3.5 +S_BEG: 477 +Q_BEG: 429 +MISMATCHES: 7 +BIT_SCORE: 18.9 +Q_END: 391 +GAPS: 0 +S_END: 515 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 6 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 3.5 +S_BEG: 530 +Q_BEG: 199 +MISMATCHES: 0 +BIT_SCORE: 18.9 +Q_END: 182 +GAPS: 0 +S_END: 547 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 6 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 3.5 +S_BEG: 182 +Q_BEG: 547 +MISMATCHES: 0 +BIT_SCORE: 18.9 +Q_END: 530 +GAPS: 0 +S_END: 199 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: 8D5s 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470 +GAPS: 0 +S_END: 220 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 77.78 +E_VAL: 9.1 +S_BEG: 485 +Q_BEG: 716 +MISMATCHES: 2 +BIT_SCORE: 17.6 +Q_END: 742 +GAPS: 0 +S_END: 511 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 15 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 9.1 +S_BEG: 695 +Q_BEG: 585 +MISMATCHES: 9 +BIT_SCORE: 17.6 +Q_END: 629 +GAPS: 0 +S_END: 739 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 17 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 41.18 +E_VAL: 9.1 +S_BEG: 259 +Q_BEG: 828 +MISMATCHES: 10 +BIT_SCORE: 17.6 +Q_END: 878 +GAPS: 0 +S_END: 309 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 9.1 +S_BEG: 250 +Q_BEG: 221 +MISMATCHES: 8 +BIT_SCORE: 17.6 +Q_END: 262 +GAPS: 0 +S_END: 291 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: 8D5s +REC_TYPE: BLAST +IDENT: 45.45 +E_VAL: 9.1 +S_BEG: 26 +Q_BEG: 242 +MISMATCHES: 6 +BIT_SCORE: 17.6 +Q_END: 274 +GAPS: 0 +S_END: 58 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 123 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 40.65 +E_VAL: 3e-64 +S_BEG: 197 +Q_BEG: 163 +MISMATCHES: 73 +BIT_SCORE: 102 +Q_END: 531 +GAPS: 0 +S_END: 565 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 90 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 46.67 +E_VAL: 3e-64 +S_BEG: 833 +Q_BEG: 814 +MISMATCHES: 48 +BIT_SCORE: 97.7 +Q_END: 1083 +GAPS: 0 +S_END: 1102 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 72 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 45.83 +E_VAL: 3e-64 +S_BEG: 614 +Q_BEG: 592 +MISMATCHES: 39 +BIT_SCORE: 74.4 +Q_END: 807 +GAPS: 0 +S_END: 829 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 102 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 42.16 +E_VAL: 4e-36 +S_BEG: 796 +Q_BEG: 1082 +MISMATCHES: 59 +BIT_SCORE: 74.4 +Q_END: 777 +GAPS: 0 +S_END: 1101 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 92 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 42.39 +E_VAL: 4e-36 +S_BEG: 265 +Q_BEG: 506 +MISMATCHES: 53 +BIT_SCORE: 69.8 +Q_END: 231 +GAPS: 0 +S_END: 540 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 35 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 4e-36 +S_BEG: 607 +Q_BEG: 689 +MISMATCHES: 20 +BIT_SCORE: 52.4 +Q_END: 585 +GAPS: 0 +S_END: 711 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 74 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 37.84 +E_VAL: 4e-14 +S_BEG: 867 +Q_BEG: 848 +MISMATCHES: 46 +BIT_SCORE: 52.4 +Q_END: 1069 +GAPS: 0 +S_END: 1088 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 4e-14 +S_BEG: 402 +Q_BEG: 368 +MISMATCHES: 9 +BIT_SCORE: 49.2 +Q_END: 421 +GAPS: 0 +S_END: 455 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 32 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 4e-14 +S_BEG: 276 +Q_BEG: 242 +MISMATCHES: 20 +BIT_SCORE: 49.2 +Q_END: 337 +GAPS: 0 +S_END: 371 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 41 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 43.90 +E_VAL: 6e-12 +S_BEG: 962 +Q_BEG: 1065 +MISMATCHES: 23 +BIT_SCORE: 49.2 +Q_END: 943 +GAPS: 0 +S_END: 1084 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 6e-12 +S_BEG: 405 +Q_BEG: 496 +MISMATCHES: 27 +BIT_SCORE: 49.2 +Q_END: 371 +GAPS: 0 +S_END: 530 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 6e-12 +S_BEG: 754 +Q_BEG: 806 +MISMATCHES: 10 +BIT_SCORE: 49.2 +Q_END: 732 +GAPS: 0 +S_END: 828 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 79 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 37.97 +E_VAL: 2e-10 +S_BEG: 868 +Q_BEG: 849 +MISMATCHES: 49 +BIT_SCORE: 49.2 +Q_END: 1085 +GAPS: 0 +S_END: 1104 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 2e-10 +S_BEG: 406 +Q_BEG: 372 +MISMATCHES: 27 +BIT_SCORE: 31.8 +Q_END: 497 +GAPS: 0 +S_END: 531 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 30 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 2e-10 +S_BEG: 309 +Q_BEG: 257 +MISMATCHES: 20 +BIT_SCORE: 31.8 +Q_END: 346 +GAPS: 0 +S_END: 398 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 61 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 34.43 +E_VAL: 3e-06 +S_BEG: 921 +Q_BEG: 1084 +MISMATCHES: 40 +BIT_SCORE: 31.8 +Q_END: 902 +GAPS: 0 +S_END: 1103 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 57 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 3e-06 +S_BEG: 398 +Q_BEG: 534 +MISMATCHES: 38 +BIT_SCORE: 28.6 +Q_END: 364 +GAPS: 0 +S_END: 568 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 0.054 +S_BEG: 399 +Q_BEG: 794 +MISMATCHES: 4 +BIT_SCORE: 24.4 +Q_END: 823 +GAPS: 0 +S_END: 428 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 42.11 +E_VAL: 0.054 +S_BEG: 196 +Q_BEG: 540 +MISMATCHES: 11 +BIT_SCORE: 24.0 +Q_END: 596 +GAPS: 0 +S_END: 252 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 0.054 +S_BEG: 439 +Q_BEG: 987 +MISMATCHES: 12 +BIT_SCORE: 24.0 +Q_END: 1049 +GAPS: 0 +S_END: 501 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 48 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 25.00 +E_VAL: 0.062 +S_BEG: 370 +Q_BEG: 572 +MISMATCHES: 36 +BIT_SCORE: 24.0 +Q_END: 429 +GAPS: 0 +S_END: 513 +--- 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SOK33 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 0.19 +S_BEG: 957 +Q_BEG: 929 +MISMATCHES: 5 +BIT_SCORE: 22.6 +Q_END: 961 +GAPS: 0 +S_END: 989 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 0.27 +S_BEG: 186 +Q_BEG: 280 +MISMATCHES: 10 +BIT_SCORE: 22.6 +Q_END: 227 +GAPS: 0 +S_END: 239 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 0.38 +S_BEG: 322 +Q_BEG: 843 +MISMATCHES: 5 +BIT_SCORE: 22.1 +Q_END: 808 +GAPS: 0 +S_END: 357 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 0.42 +S_BEG: 969 +Q_BEG: 523 +MISMATCHES: 5 +BIT_SCORE: 21.7 +Q_END: 491 +GAPS: 0 +S_END: 1001 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 43.75 +E_VAL: 0.42 +S_BEG: 795 +Q_BEG: 395 +MISMATCHES: 9 +BIT_SCORE: 21.7 +Q_END: 348 +GAPS: 0 +S_END: 842 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 22 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 45.45 +E_VAL: 0.52 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+IDENT: 54.55 +E_VAL: 6.6 +S_BEG: 789 +Q_BEG: 606 +MISMATCHES: 5 +BIT_SCORE: 18.0 +Q_END: 638 +GAPS: 0 +S_END: 821 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 38.89 +E_VAL: 6.6 +S_BEG: 750 +Q_BEG: 151 +MISMATCHES: 11 +BIT_SCORE: 18.0 +Q_END: 98 +GAPS: 0 +S_END: 803 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 23 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 34.78 +E_VAL: 6.6 +S_BEG: 106 +Q_BEG: 957 +MISMATCHES: 15 +BIT_SCORE: 18.0 +Q_END: 1025 +GAPS: 0 +S_END: 174 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 6.6 +S_BEG: 292 +Q_BEG: 957 +MISMATCHES: 8 +BIT_SCORE: 18.0 +Q_END: 1004 +GAPS: 0 +S_END: 339 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 9.0 +S_BEG: 254 +Q_BEG: 79 +MISMATCHES: 10 +BIT_SCORE: 17.6 +Q_END: 32 +GAPS: 0 +S_END: 301 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 28 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 9.0 +S_BEG: 794 +Q_BEG: 813 +MISMATCHES: 18 +BIT_SCORE: 17.6 +Q_END: 896 +GAPS: 0 +S_END: 877 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 9.0 +S_BEG: 612 +Q_BEG: 68 +MISMATCHES: 5 +BIT_SCORE: 17.6 +Q_END: 97 +GAPS: 0 +S_END: 641 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 38.89 +E_VAL: 9.0 +S_BEG: 396 +Q_BEG: 824 +MISMATCHES: 11 +BIT_SCORE: 17.6 +Q_END: 877 +GAPS: 0 +S_END: 449 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 15 +S_ID: SOK33 +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 9.1 +S_BEG: 936 +Q_BEG: 761 +MISMATCHES: 9 +BIT_SCORE: 17.6 +Q_END: 717 +GAPS: 0 +S_END: 980 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 123 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 40.65 +E_VAL: 6e-64 +S_BEG: 203 +Q_BEG: 163 +MISMATCHES: 73 +BIT_SCORE: 102 +Q_END: 531 +GAPS: 0 +S_END: 571 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 84 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 48.81 +E_VAL: 6e-64 +S_BEG: 839 +Q_BEG: 814 +MISMATCHES: 43 +BIT_SCORE: 96.8 +Q_END: 1065 +GAPS: 0 +S_END: 1090 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 72 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 45.83 +E_VAL: 6e-64 +S_BEG: 620 +Q_BEG: 592 +MISMATCHES: 39 +BIT_SCORE: 71.6 +Q_END: 807 +GAPS: 0 +S_END: 835 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 96 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 43.75 +E_VAL: 3e-35 +S_BEG: 802 +Q_BEG: 1064 +MISMATCHES: 54 +BIT_SCORE: 71.6 +Q_END: 777 +GAPS: 0 +S_END: 1089 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 92 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 42.39 +E_VAL: 3e-35 +S_BEG: 271 +Q_BEG: 506 +MISMATCHES: 53 +BIT_SCORE: 69.8 +Q_END: 231 +GAPS: 0 +S_END: 546 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 35 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 3e-35 +S_BEG: 613 +Q_BEG: 689 +MISMATCHES: 20 +BIT_SCORE: 52.4 +Q_END: 585 +GAPS: 0 +S_END: 717 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 74 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 37.84 +E_VAL: 4e-14 +S_BEG: 873 +Q_BEG: 848 +MISMATCHES: 46 +BIT_SCORE: 52.4 +Q_END: 1069 +GAPS: 0 +S_END: 1094 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 4e-14 +S_BEG: 408 +Q_BEG: 368 +MISMATCHES: 9 +BIT_SCORE: 45.5 +Q_END: 421 +GAPS: 0 +S_END: 461 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 32 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 4e-14 +S_BEG: 282 +Q_BEG: 242 +MISMATCHES: 20 +BIT_SCORE: 45.5 +Q_END: 337 +GAPS: 0 +S_END: 377 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 41 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 43.90 +E_VAL: 6e-12 +S_BEG: 968 +Q_BEG: 1065 +MISMATCHES: 23 +BIT_SCORE: 45.5 +Q_END: 943 +GAPS: 0 +S_END: 1090 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 6e-12 +S_BEG: 411 +Q_BEG: 496 +MISMATCHES: 27 +BIT_SCORE: 45.5 +Q_END: 371 +GAPS: 0 +S_END: 536 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 6e-12 +S_BEG: 760 +Q_BEG: 806 +MISMATCHES: 10 +BIT_SCORE: 45.5 +Q_END: 732 +GAPS: 0 +S_END: 834 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 74 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 36.49 +E_VAL: 2e-09 +S_BEG: 874 +Q_BEG: 849 +MISMATCHES: 47 +BIT_SCORE: 45.5 +Q_END: 1070 +GAPS: 0 +S_END: 1095 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 2e-09 +S_BEG: 412 +Q_BEG: 372 +MISMATCHES: 27 +BIT_SCORE: 28.6 +Q_END: 497 +GAPS: 0 +S_END: 537 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 30 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 2e-09 +S_BEG: 315 +Q_BEG: 257 +MISMATCHES: 20 +BIT_SCORE: 28.6 +Q_END: 346 +GAPS: 0 +S_END: 404 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 57 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 3e-05 +S_BEG: 404 +Q_BEG: 534 +MISMATCHES: 38 +BIT_SCORE: 28.6 +Q_END: 364 +GAPS: 0 +S_END: 574 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 54 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 35.19 +E_VAL: 3e-05 +S_BEG: 927 +Q_BEG: 1063 +MISMATCHES: 35 +BIT_SCORE: 28.1 +Q_END: 902 +GAPS: 0 +S_END: 1088 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 0.055 +S_BEG: 405 +Q_BEG: 794 +MISMATCHES: 4 +BIT_SCORE: 24.4 +Q_END: 823 +GAPS: 0 +S_END: 434 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 42.11 +E_VAL: 0.055 +S_BEG: 202 +Q_BEG: 540 +MISMATCHES: 11 +BIT_SCORE: 24.0 +Q_END: 596 +GAPS: 0 +S_END: 258 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 0.055 +S_BEG: 445 +Q_BEG: 987 +MISMATCHES: 12 +BIT_SCORE: 24.0 +Q_END: 1049 +GAPS: 0 +S_END: 507 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 48 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 25.00 +E_VAL: 0.062 +S_BEG: 376 +Q_BEG: 572 +MISMATCHES: 36 +BIT_SCORE: 24.0 +Q_END: 429 +GAPS: 0 +S_END: 519 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 31 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 32.26 +E_VAL: 0.062 +S_BEG: 973 +Q_BEG: 1085 +MISMATCHES: 21 +BIT_SCORE: 24.0 +Q_END: 993 +GAPS: 0 +S_END: 1065 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 57.14 +E_VAL: 0.11 +S_BEG: 624 +Q_BEG: 1028 +MISMATCHES: 6 +BIT_SCORE: 24.0 +Q_END: 1069 +GAPS: 0 +S_END: 665 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 36 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 27.78 +E_VAL: 0.11 +S_BEG: 579 +Q_BEG: 221 +MISMATCHES: 26 +BIT_SCORE: 22.6 +Q_END: 328 +GAPS: 0 +S_END: 686 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 51 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 25.49 +E_VAL: 0.11 +S_BEG: 805 +Q_BEG: 378 +MISMATCHES: 38 +BIT_SCORE: 22.6 +Q_END: 530 +GAPS: 0 +S_END: 957 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 13 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 53.85 +E_VAL: 0.19 +S_BEG: 873 +Q_BEG: 1046 +MISMATCHES: 6 +BIT_SCORE: 22.6 +Q_END: 1084 +GAPS: 0 +S_END: 911 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 0.19 +S_BEG: 963 +Q_BEG: 929 +MISMATCHES: 5 +BIT_SCORE: 22.6 +Q_END: 961 +GAPS: 0 +S_END: 995 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 0.27 +S_BEG: 192 +Q_BEG: 280 +MISMATCHES: 10 +BIT_SCORE: 22.6 +Q_END: 227 +GAPS: 0 +S_END: 245 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 0.38 +S_BEG: 328 +Q_BEG: 843 +MISMATCHES: 5 +BIT_SCORE: 22.1 +Q_END: 808 +GAPS: 0 +S_END: 363 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 0.42 +S_BEG: 975 +Q_BEG: 523 +MISMATCHES: 5 +BIT_SCORE: 21.7 +Q_END: 491 +GAPS: 0 +S_END: 1007 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 43.75 +E_VAL: 0.42 +S_BEG: 801 +Q_BEG: 395 +MISMATCHES: 9 +BIT_SCORE: 21.7 +Q_END: 348 +GAPS: 0 +S_END: 848 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 22 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 45.45 +E_VAL: 0.52 +S_BEG: 15 +Q_BEG: 247 +MISMATCHES: 12 +BIT_SCORE: 21.7 +Q_END: 182 +GAPS: 0 +S_END: 80 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 20 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 0.71 +S_BEG: 327 +Q_BEG: 457 +MISMATCHES: 12 +BIT_SCORE: 21.2 +Q_END: 398 +GAPS: 0 +S_END: 386 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 17 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 41.18 +E_VAL: 0.91 +S_BEG: 732 +Q_BEG: 431 +MISMATCHES: 10 +BIT_SCORE: 20.3 +Q_END: 481 +GAPS: 0 +S_END: 782 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 0.91 +S_BEG: 794 +Q_BEG: 258 +MISMATCHES: 8 +BIT_SCORE: 20.3 +Q_END: 305 +GAPS: 0 +S_END: 841 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 26 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 38.46 +E_VAL: 1.2 +S_BEG: 285 +Q_BEG: 809 +MISMATCHES: 16 +BIT_SCORE: 20.3 +Q_END: 886 +GAPS: 0 +S_END: 362 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 1.2 +S_BEG: 621 +Q_BEG: 416 +MISMATCHES: 8 +BIT_SCORE: 19.9 +Q_END: 457 +GAPS: 0 +S_END: 662 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 70.00 +E_VAL: 1.9 +S_BEG: 177 +Q_BEG: 1036 +MISMATCHES: 3 +BIT_SCORE: 19.9 +Q_END: 1007 +GAPS: 0 +S_END: 206 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 51 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 27.45 +E_VAL: 2.5 +S_BEG: 82 +Q_BEG: 445 +MISMATCHES: 37 +BIT_SCORE: 19.4 +Q_END: 293 +GAPS: 0 +S_END: 234 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 36.00 +E_VAL: 2.5 +S_BEG: 645 +Q_BEG: 448 +MISMATCHES: 16 +BIT_SCORE: 19.4 +Q_END: 374 +GAPS: 0 +S_END: 719 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 4.8 +S_BEG: 714 +Q_BEG: 452 +MISMATCHES: 10 +BIT_SCORE: 18.5 +Q_END: 505 +GAPS: 0 +S_END: 767 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 38.10 +E_VAL: 4.8 +S_BEG: 345 +Q_BEG: 188 +MISMATCHES: 13 +BIT_SCORE: 18.5 +Q_END: 250 +GAPS: 0 +S_END: 407 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 4.8 +S_BEG: 876 +Q_BEG: 1081 +MISMATCHES: 5 +BIT_SCORE: 18.5 +Q_END: 1046 +GAPS: 0 +S_END: 911 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 4.8 +S_BEG: 744 +Q_BEG: 1090 +MISMATCHES: 5 +BIT_SCORE: 18.5 +Q_END: 1058 +GAPS: 0 +S_END: 776 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 66.67 +E_VAL: 4.8 +S_BEG: 447 +Q_BEG: 2 +MISMATCHES: 3 +BIT_SCORE: 18.5 +Q_END: 28 +GAPS: 0 +S_END: 473 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 6.6 +S_BEG: 299 +Q_BEG: 451 +MISMATCHES: 8 +BIT_SCORE: 18.0 +Q_END: 410 +GAPS: 0 +S_END: 340 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 6.6 +S_BEG: 795 +Q_BEG: 606 +MISMATCHES: 5 +BIT_SCORE: 18.0 +Q_END: 638 +GAPS: 0 +S_END: 827 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 38.89 +E_VAL: 6.6 +S_BEG: 756 +Q_BEG: 151 +MISMATCHES: 11 +BIT_SCORE: 18.0 +Q_END: 98 +GAPS: 0 +S_END: 809 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 23 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 34.78 +E_VAL: 6.6 +S_BEG: 112 +Q_BEG: 957 +MISMATCHES: 15 +BIT_SCORE: 18.0 +Q_END: 1025 +GAPS: 0 +S_END: 180 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 6.6 +S_BEG: 298 +Q_BEG: 957 +MISMATCHES: 8 +BIT_SCORE: 18.0 +Q_END: 1004 +GAPS: 0 +S_END: 345 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 9.0 +S_BEG: 260 +Q_BEG: 79 +MISMATCHES: 10 +BIT_SCORE: 17.6 +Q_END: 32 +GAPS: 0 +S_END: 307 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 28 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 9.0 +S_BEG: 800 +Q_BEG: 813 +MISMATCHES: 18 +BIT_SCORE: 17.6 +Q_END: 896 +GAPS: 0 +S_END: 883 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 9.0 +S_BEG: 618 +Q_BEG: 68 +MISMATCHES: 5 +BIT_SCORE: 17.6 +Q_END: 97 +GAPS: 0 +S_END: 647 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 38.89 +E_VAL: 9.0 +S_BEG: 402 +Q_BEG: 824 +MISMATCHES: 11 +BIT_SCORE: 17.6 +Q_END: 877 +GAPS: 0 +S_END: 455 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 15 +S_ID: SOK41 +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 9.1 +S_BEG: 942 +Q_BEG: 761 +MISMATCHES: 9 +BIT_SCORE: 17.6 +Q_END: 717 +GAPS: 0 +S_END: 986 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 123 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 40.65 +E_VAL: 6e-64 +S_BEG: 196 +Q_BEG: 163 +MISMATCHES: 73 +BIT_SCORE: 102 +Q_END: 531 +GAPS: 0 +S_END: 564 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 84 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 48.81 +E_VAL: 6e-64 +S_BEG: 832 +Q_BEG: 814 +MISMATCHES: 43 +BIT_SCORE: 96.8 +Q_END: 1065 +GAPS: 0 +S_END: 1083 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 72 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 45.83 +E_VAL: 6e-64 +S_BEG: 613 +Q_BEG: 592 +MISMATCHES: 39 +BIT_SCORE: 71.6 +Q_END: 807 +GAPS: 0 +S_END: 828 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 96 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 43.75 +E_VAL: 3e-35 +S_BEG: 795 +Q_BEG: 1064 +MISMATCHES: 54 +BIT_SCORE: 71.6 +Q_END: 777 +GAPS: 0 +S_END: 1082 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 92 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 42.39 +E_VAL: 3e-35 +S_BEG: 264 +Q_BEG: 506 +MISMATCHES: 53 +BIT_SCORE: 69.8 +Q_END: 231 +GAPS: 0 +S_END: 539 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 35 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 3e-35 +S_BEG: 606 +Q_BEG: 689 +MISMATCHES: 20 +BIT_SCORE: 52.4 +Q_END: 585 +GAPS: 0 +S_END: 710 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 74 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 37.84 +E_VAL: 4e-14 +S_BEG: 866 +Q_BEG: 848 +MISMATCHES: 46 +BIT_SCORE: 52.4 +Q_END: 1069 +GAPS: 0 +S_END: 1087 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 4e-14 +S_BEG: 401 +Q_BEG: 368 +MISMATCHES: 9 +BIT_SCORE: 45.5 +Q_END: 421 +GAPS: 0 +S_END: 454 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 32 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 4e-14 +S_BEG: 275 +Q_BEG: 242 +MISMATCHES: 20 +BIT_SCORE: 45.5 +Q_END: 337 +GAPS: 0 +S_END: 370 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 41 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 43.90 +E_VAL: 6e-12 +S_BEG: 961 +Q_BEG: 1065 +MISMATCHES: 23 +BIT_SCORE: 45.5 +Q_END: 943 +GAPS: 0 +S_END: 1083 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 6e-12 +S_BEG: 404 +Q_BEG: 496 +MISMATCHES: 27 +BIT_SCORE: 45.5 +Q_END: 371 +GAPS: 0 +S_END: 529 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 6e-12 +S_BEG: 753 +Q_BEG: 806 +MISMATCHES: 10 +BIT_SCORE: 45.5 +Q_END: 732 +GAPS: 0 +S_END: 827 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 74 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 36.49 +E_VAL: 2e-09 +S_BEG: 867 +Q_BEG: 849 +MISMATCHES: 47 +BIT_SCORE: 45.5 +Q_END: 1070 +GAPS: 0 +S_END: 1088 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 2e-09 +S_BEG: 405 +Q_BEG: 372 +MISMATCHES: 27 +BIT_SCORE: 28.6 +Q_END: 497 +GAPS: 0 +S_END: 530 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 30 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 2e-09 +S_BEG: 308 +Q_BEG: 257 +MISMATCHES: 20 +BIT_SCORE: 28.6 +Q_END: 346 +GAPS: 0 +S_END: 397 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 57 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 3e-05 +S_BEG: 397 +Q_BEG: 534 +MISMATCHES: 38 +BIT_SCORE: 28.6 +Q_END: 364 +GAPS: 0 +S_END: 567 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 54 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 35.19 +E_VAL: 3e-05 +S_BEG: 920 +Q_BEG: 1063 +MISMATCHES: 35 +BIT_SCORE: 28.1 +Q_END: 902 +GAPS: 0 +S_END: 1081 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 0.054 +S_BEG: 398 +Q_BEG: 794 +MISMATCHES: 4 +BIT_SCORE: 24.4 +Q_END: 823 +GAPS: 0 +S_END: 427 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 42.11 +E_VAL: 0.054 +S_BEG: 195 +Q_BEG: 540 +MISMATCHES: 11 +BIT_SCORE: 24.0 +Q_END: 596 +GAPS: 0 +S_END: 251 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 0.054 +S_BEG: 438 +Q_BEG: 987 +MISMATCHES: 12 +BIT_SCORE: 24.0 +Q_END: 1049 +GAPS: 0 +S_END: 500 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 48 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 25.00 +E_VAL: 0.062 +S_BEG: 369 +Q_BEG: 572 +MISMATCHES: 36 +BIT_SCORE: 24.0 +Q_END: 429 +GAPS: 0 +S_END: 512 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 31 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 32.26 +E_VAL: 0.062 +S_BEG: 966 +Q_BEG: 1085 +MISMATCHES: 21 +BIT_SCORE: 24.0 +Q_END: 993 +GAPS: 0 +S_END: 1058 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 57.14 +E_VAL: 0.11 +S_BEG: 617 +Q_BEG: 1028 +MISMATCHES: 6 +BIT_SCORE: 24.0 +Q_END: 1069 +GAPS: 0 +S_END: 658 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 36 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 27.78 +E_VAL: 0.11 +S_BEG: 572 +Q_BEG: 221 +MISMATCHES: 26 +BIT_SCORE: 22.6 +Q_END: 328 +GAPS: 0 +S_END: 679 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 51 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 25.49 +E_VAL: 0.11 +S_BEG: 798 +Q_BEG: 378 +MISMATCHES: 38 +BIT_SCORE: 22.6 +Q_END: 530 +GAPS: 0 +S_END: 950 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 13 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 53.85 +E_VAL: 0.19 +S_BEG: 866 +Q_BEG: 1046 +MISMATCHES: 6 +BIT_SCORE: 22.6 +Q_END: 1084 +GAPS: 0 +S_END: 904 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 0.19 +S_BEG: 956 +Q_BEG: 929 +MISMATCHES: 5 +BIT_SCORE: 22.6 +Q_END: 961 +GAPS: 0 +S_END: 988 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 0.27 +S_BEG: 185 +Q_BEG: 280 +MISMATCHES: 10 +BIT_SCORE: 22.6 +Q_END: 227 +GAPS: 0 +S_END: 238 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 0.38 +S_BEG: 321 +Q_BEG: 843 +MISMATCHES: 5 +BIT_SCORE: 22.1 +Q_END: 808 +GAPS: 0 +S_END: 356 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 0.42 +S_BEG: 968 +Q_BEG: 523 +MISMATCHES: 5 +BIT_SCORE: 21.7 +Q_END: 491 +GAPS: 0 +S_END: 1000 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 43.75 +E_VAL: 0.42 +S_BEG: 794 +Q_BEG: 395 +MISMATCHES: 9 +BIT_SCORE: 21.7 +Q_END: 348 +GAPS: 0 +S_END: 841 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 22 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 45.45 +E_VAL: 0.52 +S_BEG: 8 +Q_BEG: 247 +MISMATCHES: 12 +BIT_SCORE: 21.7 +Q_END: 182 +GAPS: 0 +S_END: 73 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 20 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 0.71 +S_BEG: 320 +Q_BEG: 457 +MISMATCHES: 12 +BIT_SCORE: 21.2 +Q_END: 398 +GAPS: 0 +S_END: 379 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 17 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 41.18 +E_VAL: 0.91 +S_BEG: 725 +Q_BEG: 431 +MISMATCHES: 10 +BIT_SCORE: 20.3 +Q_END: 481 +GAPS: 0 +S_END: 775 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 0.91 +S_BEG: 787 +Q_BEG: 258 +MISMATCHES: 8 +BIT_SCORE: 20.3 +Q_END: 305 +GAPS: 0 +S_END: 834 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 26 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 38.46 +E_VAL: 1.2 +S_BEG: 278 +Q_BEG: 809 +MISMATCHES: 16 +BIT_SCORE: 20.3 +Q_END: 886 +GAPS: 0 +S_END: 355 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 1.2 +S_BEG: 614 +Q_BEG: 416 +MISMATCHES: 8 +BIT_SCORE: 19.9 +Q_END: 457 +GAPS: 0 +S_END: 655 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 70.00 +E_VAL: 1.9 +S_BEG: 170 +Q_BEG: 1036 +MISMATCHES: 3 +BIT_SCORE: 19.9 +Q_END: 1007 +GAPS: 0 +S_END: 199 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 51 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 27.45 +E_VAL: 2.5 +S_BEG: 75 +Q_BEG: 445 +MISMATCHES: 37 +BIT_SCORE: 19.4 +Q_END: 293 +GAPS: 0 +S_END: 227 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 36.00 +E_VAL: 2.5 +S_BEG: 638 +Q_BEG: 448 +MISMATCHES: 16 +BIT_SCORE: 19.4 +Q_END: 374 +GAPS: 0 +S_END: 712 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 4.8 +S_BEG: 707 +Q_BEG: 452 +MISMATCHES: 10 +BIT_SCORE: 18.5 +Q_END: 505 +GAPS: 0 +S_END: 760 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 38.10 +E_VAL: 4.8 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+Q_END: 638 +GAPS: 0 +S_END: 820 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 38.89 +E_VAL: 6.6 +S_BEG: 749 +Q_BEG: 151 +MISMATCHES: 11 +BIT_SCORE: 18.0 +Q_END: 98 +GAPS: 0 +S_END: 802 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 23 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 34.78 +E_VAL: 6.6 +S_BEG: 105 +Q_BEG: 957 +MISMATCHES: 15 +BIT_SCORE: 18.0 +Q_END: 1025 +GAPS: 0 +S_END: 173 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 6.6 +S_BEG: 291 +Q_BEG: 957 +MISMATCHES: 8 +BIT_SCORE: 18.0 +Q_END: 1004 +GAPS: 0 +S_END: 338 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 9.0 +S_BEG: 253 +Q_BEG: 79 +MISMATCHES: 10 +BIT_SCORE: 17.6 +Q_END: 32 +GAPS: 0 +S_END: 300 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 28 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 9.0 +S_BEG: 793 +Q_BEG: 813 +MISMATCHES: 18 +BIT_SCORE: 17.6 +Q_END: 896 +GAPS: 0 +S_END: 876 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 9.0 +S_BEG: 611 +Q_BEG: 68 +MISMATCHES: 5 +BIT_SCORE: 17.6 +Q_END: 97 +GAPS: 0 +S_END: 640 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 38.89 +E_VAL: 9.0 +S_BEG: 395 +Q_BEG: 824 +MISMATCHES: 11 +BIT_SCORE: 17.6 +Q_END: 877 +GAPS: 0 +S_END: 448 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 15 +S_ID: SOK32 +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 9.1 +S_BEG: 935 +Q_BEG: 761 +MISMATCHES: 9 +BIT_SCORE: 17.6 +Q_END: 717 +GAPS: 0 +S_END: 979 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 123 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 40.65 +E_VAL: 6e-64 +S_BEG: 192 +Q_BEG: 163 +MISMATCHES: 73 +BIT_SCORE: 102 +Q_END: 531 +GAPS: 0 +S_END: 560 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 84 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 48.81 +E_VAL: 6e-64 +S_BEG: 828 +Q_BEG: 814 +MISMATCHES: 43 +BIT_SCORE: 96.8 +Q_END: 1065 +GAPS: 0 +S_END: 1079 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 72 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 45.83 +E_VAL: 6e-64 +S_BEG: 609 +Q_BEG: 592 +MISMATCHES: 39 +BIT_SCORE: 71.6 +Q_END: 807 +GAPS: 0 +S_END: 824 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 96 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 43.75 +E_VAL: 3e-35 +S_BEG: 791 +Q_BEG: 1064 +MISMATCHES: 54 +BIT_SCORE: 71.6 +Q_END: 777 +GAPS: 0 +S_END: 1078 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 92 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 42.39 +E_VAL: 3e-35 +S_BEG: 260 +Q_BEG: 506 +MISMATCHES: 53 +BIT_SCORE: 69.8 +Q_END: 231 +GAPS: 0 +S_END: 535 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 35 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 3e-35 +S_BEG: 602 +Q_BEG: 689 +MISMATCHES: 20 +BIT_SCORE: 52.4 +Q_END: 585 +GAPS: 0 +S_END: 706 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 74 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 37.84 +E_VAL: 4e-14 +S_BEG: 862 +Q_BEG: 848 +MISMATCHES: 46 +BIT_SCORE: 52.4 +Q_END: 1069 +GAPS: 0 +S_END: 1083 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 4e-14 +S_BEG: 397 +Q_BEG: 368 +MISMATCHES: 9 +BIT_SCORE: 45.5 +Q_END: 421 +GAPS: 0 +S_END: 450 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 32 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 4e-14 +S_BEG: 271 +Q_BEG: 242 +MISMATCHES: 20 +BIT_SCORE: 45.5 +Q_END: 337 +GAPS: 0 +S_END: 366 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 41 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 43.90 +E_VAL: 6e-12 +S_BEG: 957 +Q_BEG: 1065 +MISMATCHES: 23 +BIT_SCORE: 45.5 +Q_END: 943 +GAPS: 0 +S_END: 1079 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 6e-12 +S_BEG: 400 +Q_BEG: 496 +MISMATCHES: 27 +BIT_SCORE: 45.5 +Q_END: 371 +GAPS: 0 +S_END: 525 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 6e-12 +S_BEG: 749 +Q_BEG: 806 +MISMATCHES: 10 +BIT_SCORE: 45.5 +Q_END: 732 +GAPS: 0 +S_END: 823 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 74 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 36.49 +E_VAL: 2e-09 +S_BEG: 863 +Q_BEG: 849 +MISMATCHES: 47 +BIT_SCORE: 45.5 +Q_END: 1070 +GAPS: 0 +S_END: 1084 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 42 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 2e-09 +S_BEG: 401 +Q_BEG: 372 +MISMATCHES: 27 +BIT_SCORE: 28.6 +Q_END: 497 +GAPS: 0 +S_END: 526 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 30 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 2e-09 +S_BEG: 304 +Q_BEG: 257 +MISMATCHES: 20 +BIT_SCORE: 28.6 +Q_END: 346 +GAPS: 0 +S_END: 393 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 57 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 3e-05 +S_BEG: 393 +Q_BEG: 534 +MISMATCHES: 38 +BIT_SCORE: 28.6 +Q_END: 364 +GAPS: 0 +S_END: 563 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 54 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 35.19 +E_VAL: 3e-05 +S_BEG: 916 +Q_BEG: 1063 +MISMATCHES: 35 +BIT_SCORE: 28.1 +Q_END: 902 +GAPS: 0 +S_END: 1077 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 60.00 +E_VAL: 0.054 +S_BEG: 394 +Q_BEG: 794 +MISMATCHES: 4 +BIT_SCORE: 24.4 +Q_END: 823 +GAPS: 0 +S_END: 423 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 42.11 +E_VAL: 0.054 +S_BEG: 191 +Q_BEG: 540 +MISMATCHES: 11 +BIT_SCORE: 24.0 +Q_END: 596 +GAPS: 0 +S_END: 247 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 0.054 +S_BEG: 434 +Q_BEG: 987 +MISMATCHES: 12 +BIT_SCORE: 24.0 +Q_END: 1049 +GAPS: 0 +S_END: 496 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 48 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 25.00 +E_VAL: 0.062 +S_BEG: 365 +Q_BEG: 572 +MISMATCHES: 36 +BIT_SCORE: 24.0 +Q_END: 429 +GAPS: 0 +S_END: 508 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 31 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 32.26 +E_VAL: 0.062 +S_BEG: 962 +Q_BEG: 1085 +MISMATCHES: 21 +BIT_SCORE: 24.0 +Q_END: 993 +GAPS: 0 +S_END: 1054 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 57.14 +E_VAL: 0.11 +S_BEG: 613 +Q_BEG: 1028 +MISMATCHES: 6 +BIT_SCORE: 24.0 +Q_END: 1069 +GAPS: 0 +S_END: 654 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 36 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 27.78 +E_VAL: 0.11 +S_BEG: 568 +Q_BEG: 221 +MISMATCHES: 26 +BIT_SCORE: 22.6 +Q_END: 328 +GAPS: 0 +S_END: 675 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 51 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 25.49 +E_VAL: 0.11 +S_BEG: 794 +Q_BEG: 378 +MISMATCHES: 38 +BIT_SCORE: 22.6 +Q_END: 530 +GAPS: 0 +S_END: 946 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 13 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 53.85 +E_VAL: 0.19 +S_BEG: 862 +Q_BEG: 1046 +MISMATCHES: 6 +BIT_SCORE: 22.6 +Q_END: 1084 +GAPS: 0 +S_END: 900 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 0.19 +S_BEG: 952 +Q_BEG: 929 +MISMATCHES: 5 +BIT_SCORE: 22.6 +Q_END: 961 +GAPS: 0 +S_END: 984 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 0.27 +S_BEG: 181 +Q_BEG: 280 +MISMATCHES: 10 +BIT_SCORE: 22.6 +Q_END: 227 +GAPS: 0 +S_END: 234 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 0.38 +S_BEG: 317 +Q_BEG: 843 +MISMATCHES: 5 +BIT_SCORE: 22.1 +Q_END: 808 +GAPS: 0 +S_END: 352 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 0.42 +S_BEG: 964 +Q_BEG: 523 +MISMATCHES: 5 +BIT_SCORE: 21.7 +Q_END: 491 +GAPS: 0 +S_END: 996 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 43.75 +E_VAL: 0.42 +S_BEG: 790 +Q_BEG: 395 +MISMATCHES: 9 +BIT_SCORE: 21.7 +Q_END: 348 +GAPS: 0 +S_END: 837 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 22 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 45.45 +E_VAL: 0.52 +S_BEG: 4 +Q_BEG: 247 +MISMATCHES: 12 +BIT_SCORE: 21.7 +Q_END: 182 +GAPS: 0 +S_END: 69 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 0.71 +S_BEG: 610 +Q_BEG: 416 +MISMATCHES: 8 +BIT_SCORE: 21.2 +Q_END: 457 +GAPS: 0 +S_END: 651 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 0.71 +S_BEG: 783 +Q_BEG: 258 +MISMATCHES: 8 +BIT_SCORE: 21.2 +Q_END: 305 +GAPS: 0 +S_END: 830 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 20 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 0.71 +S_BEG: 316 +Q_BEG: 457 +MISMATCHES: 12 +BIT_SCORE: 21.2 +Q_END: 398 +GAPS: 0 +S_END: 375 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 26 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 38.46 +E_VAL: 1.3 +S_BEG: 274 +Q_BEG: 809 +MISMATCHES: 16 +BIT_SCORE: 20.3 +Q_END: 886 +GAPS: 0 +S_END: 351 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 70.00 +E_VAL: 1.9 +S_BEG: 166 +Q_BEG: 1036 +MISMATCHES: 3 +BIT_SCORE: 19.9 +Q_END: 1007 +GAPS: 0 +S_END: 195 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 51 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 27.45 +E_VAL: 2.5 +S_BEG: 71 +Q_BEG: 445 +MISMATCHES: 37 +BIT_SCORE: 19.4 +Q_END: 293 +GAPS: 0 +S_END: 223 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 36.00 +E_VAL: 2.5 +S_BEG: 634 +Q_BEG: 448 +MISMATCHES: 16 +BIT_SCORE: 19.4 +Q_END: 374 +GAPS: 0 +S_END: 708 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 17 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 41.18 +E_VAL: 3.5 +S_BEG: 721 +Q_BEG: 431 +MISMATCHES: 10 +BIT_SCORE: 18.9 +Q_END: 481 +GAPS: 0 +S_END: 771 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 4.8 +S_BEG: 703 +Q_BEG: 452 +MISMATCHES: 10 +BIT_SCORE: 18.5 +Q_END: 505 +GAPS: 0 +S_END: 756 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 38.10 +E_VAL: 4.8 +S_BEG: 334 +Q_BEG: 188 +MISMATCHES: 13 +BIT_SCORE: 18.5 +Q_END: 250 +GAPS: 0 +S_END: 396 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 4.8 +S_BEG: 865 +Q_BEG: 1081 +MISMATCHES: 5 +BIT_SCORE: 18.5 +Q_END: 1046 +GAPS: 0 +S_END: 900 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 4.8 +S_BEG: 733 +Q_BEG: 1090 +MISMATCHES: 5 +BIT_SCORE: 18.5 +Q_END: 1058 +GAPS: 0 +S_END: 765 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 66.67 +E_VAL: 4.8 +S_BEG: 436 +Q_BEG: 2 +MISMATCHES: 3 +BIT_SCORE: 18.5 +Q_END: 28 +GAPS: 0 +S_END: 462 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 6.6 +S_BEG: 288 +Q_BEG: 451 +MISMATCHES: 8 +BIT_SCORE: 18.0 +Q_END: 410 +GAPS: 0 +S_END: 329 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 11 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 54.55 +E_VAL: 6.6 +S_BEG: 784 +Q_BEG: 606 +MISMATCHES: 5 +BIT_SCORE: 18.0 +Q_END: 638 +GAPS: 0 +S_END: 816 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 38.89 +E_VAL: 6.6 +S_BEG: 745 +Q_BEG: 151 +MISMATCHES: 11 +BIT_SCORE: 18.0 +Q_END: 98 +GAPS: 0 +S_END: 798 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 23 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 34.78 +E_VAL: 6.6 +S_BEG: 101 +Q_BEG: 957 +MISMATCHES: 15 +BIT_SCORE: 18.0 +Q_END: 1025 +GAPS: 0 +S_END: 169 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 6.6 +S_BEG: 287 +Q_BEG: 957 +MISMATCHES: 8 +BIT_SCORE: 18.0 +Q_END: 1004 +GAPS: 0 +S_END: 334 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 9.0 +S_BEG: 249 +Q_BEG: 79 +MISMATCHES: 10 +BIT_SCORE: 17.6 +Q_END: 32 +GAPS: 0 +S_END: 296 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 28 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 35.71 +E_VAL: 9.0 +S_BEG: 789 +Q_BEG: 813 +MISMATCHES: 18 +BIT_SCORE: 17.6 +Q_END: 896 +GAPS: 0 +S_END: 872 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 9.0 +S_BEG: 607 +Q_BEG: 68 +MISMATCHES: 5 +BIT_SCORE: 17.6 +Q_END: 97 +GAPS: 0 +S_END: 636 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 38.89 +E_VAL: 9.0 +S_BEG: 391 +Q_BEG: 824 +MISMATCHES: 11 +BIT_SCORE: 17.6 +Q_END: 877 +GAPS: 0 +S_END: 444 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 15 +S_ID: SOK43 +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 9.1 +S_BEG: 931 +Q_BEG: 761 +MISMATCHES: 9 +BIT_SCORE: 17.6 +Q_END: 717 +GAPS: 0 +S_END: 975 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 91 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 48.35 +E_VAL: 1e-47 +S_BEG: 399 +Q_BEG: 814 +MISMATCHES: 47 +BIT_SCORE: 102 +Q_END: 1086 +GAPS: 0 +S_END: 671 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 72 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 45.83 +E_VAL: 1e-47 +S_BEG: 180 +Q_BEG: 592 +MISMATCHES: 39 +BIT_SCORE: 75.8 +Q_END: 807 +GAPS: 0 +S_END: 395 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 44 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 43.18 +E_VAL: 1e-47 +S_BEG: 0 +Q_BEG: 400 +MISMATCHES: 25 +BIT_SCORE: 75.8 +Q_END: 531 +GAPS: 0 +S_END: 131 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 97 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 45.36 +E_VAL: 7e-24 +S_BEG: 362 +Q_BEG: 1067 +MISMATCHES: 53 +BIT_SCORE: 75.8 +Q_END: 777 +GAPS: 0 +S_END: 652 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 35 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 7e-24 +S_BEG: 173 +Q_BEG: 689 +MISMATCHES: 20 +BIT_SCORE: 50.1 +Q_END: 585 +GAPS: 0 +S_END: 277 +--- +STRAND: - +Q_ID: 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+IDENT: 60.00 +E_VAL: 1e-08 +S_BEG: 320 +Q_BEG: 806 +MISMATCHES: 10 +BIT_SCORE: 41.8 +Q_END: 732 +GAPS: 0 +S_END: 394 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 70 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 37.14 +E_VAL: 4e-07 +S_BEG: 434 +Q_BEG: 849 +MISMATCHES: 44 +BIT_SCORE: 41.8 +Q_END: 1058 +GAPS: 0 +S_END: 643 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 52 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 34.62 +E_VAL: 0.011 +S_BEG: 487 +Q_BEG: 1057 +MISMATCHES: 34 +BIT_SCORE: 27.2 +Q_END: 902 +GAPS: 0 +S_END: 642 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 42.11 +E_VAL: 0.016 +S_BEG: 589 +Q_BEG: 933 +MISMATCHES: 11 +BIT_SCORE: 24.0 +Q_END: 989 +GAPS: 0 +S_END: 645 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 13 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 53.85 +E_VAL: 0.016 +S_BEG: 433 +Q_BEG: 1046 +MISMATCHES: 6 +BIT_SCORE: 24.0 +Q_END: 1084 +GAPS: 0 +S_END: 471 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 57.14 +E_VAL: 0.11 +S_BEG: 184 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305 +GAPS: 0 +S_END: 401 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 36.00 +E_VAL: 2.5 +S_BEG: 205 +Q_BEG: 448 +MISMATCHES: 16 +BIT_SCORE: 19.4 +Q_END: 374 +GAPS: 0 +S_END: 279 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 14 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 2.5 +S_BEG: 181 +Q_BEG: 416 +MISMATCHES: 8 +BIT_SCORE: 19.4 +Q_END: 457 +GAPS: 0 +S_END: 222 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 21 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 42.86 +E_VAL: 3.5 +S_BEG: 5 +Q_BEG: 987 +MISMATCHES: 12 +BIT_SCORE: 18.9 +Q_END: 1049 +GAPS: 0 +S_END: 67 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 4.8 +S_BEG: 274 +Q_BEG: 452 +MISMATCHES: 10 +BIT_SCORE: 18.5 +Q_END: 505 +GAPS: 0 +S_END: 327 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 12 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 58.33 +E_VAL: 4.8 +S_BEG: 436 +Q_BEG: 1081 +MISMATCHES: 5 +BIT_SCORE: 18.5 +Q_END: 1046 +GAPS: 0 +S_END: 471 +--- +STRAND: - +Q_ID: 8D5s 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35.71 +E_VAL: 9.0 +S_BEG: 360 +Q_BEG: 813 +MISMATCHES: 18 +BIT_SCORE: 17.6 +Q_END: 896 +GAPS: 0 +S_END: 443 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 9.0 +S_BEG: 178 +Q_BEG: 68 +MISMATCHES: 5 +BIT_SCORE: 17.6 +Q_END: 97 +GAPS: 0 +S_END: 207 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 15 +S_ID: SOK13 +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 9.1 +S_BEG: 502 +Q_BEG: 761 +MISMATCHES: 9 +BIT_SCORE: 17.6 +Q_END: 717 +GAPS: 0 +S_END: 546 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 116 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 42.24 +E_VAL: 6e-33 +S_BEG: 224 +Q_BEG: 214 +MISMATCHES: 67 +BIT_SCORE: 112 +Q_END: 561 +GAPS: 0 +S_END: 571 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 40 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 40.00 +E_VAL: 6e-33 +S_BEG: 35 +Q_BEG: 1 +MISMATCHES: 24 +BIT_SCORE: 66.6 +Q_END: 120 +GAPS: 0 +S_END: 154 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 94 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 41.49 +E_VAL: 1e-23 +S_BEG: 232 +Q_BEG: 503 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+GAPS: 0 +S_END: 465 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 29 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 27.59 +E_VAL: 2e-04 +S_BEG: 643 +Q_BEG: 436 +MISMATCHES: 21 +BIT_SCORE: 25.8 +Q_END: 350 +GAPS: 0 +S_END: 729 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 32 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 40.62 +E_VAL: 0.030 +S_BEG: 172 +Q_BEG: 969 +MISMATCHES: 19 +BIT_SCORE: 25.8 +Q_END: 1064 +GAPS: 0 +S_END: 267 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 17 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 47.06 +E_VAL: 0.38 +S_BEG: 219 +Q_BEG: 446 +MISMATCHES: 9 +BIT_SCORE: 22.1 +Q_END: 496 +GAPS: 0 +S_END: 269 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 19 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 47.37 +E_VAL: 0.40 +S_BEG: 246 +Q_BEG: 574 +MISMATCHES: 10 +BIT_SCORE: 21.2 +Q_END: 518 +GAPS: 0 +S_END: 302 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 16 +S_ID: SOK19y +REC_TYPE: BLAST +IDENT: 37.50 +E_VAL: 0.40 +S_BEG: 51 +Q_BEG: 466 +MISMATCHES: 10 +BIT_SCORE: 20.3 +Q_END: 419 +GAPS: 0 +S_END: 98 +--- +STRAND: - +Q_ID: 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+S_END: 504 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 60 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 38.33 +E_VAL: 1e-23 +S_BEG: 544 +Q_BEG: 728 +MISMATCHES: 37 +BIT_SCORE: 44.6 +Q_END: 549 +GAPS: 0 +S_END: 723 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 40 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 32.50 +E_VAL: 1e-23 +S_BEG: 25 +Q_BEG: 119 +MISMATCHES: 27 +BIT_SCORE: 44.1 +Q_END: 0 +GAPS: 0 +S_END: 144 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 43 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 39.53 +E_VAL: 9e-08 +S_BEG: 219 +Q_BEG: 218 +MISMATCHES: 26 +BIT_SCORE: 44.1 +Q_END: 346 +GAPS: 0 +S_END: 347 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 32 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 43.75 +E_VAL: 2e-04 +S_BEG: 471 +Q_BEG: 301 +MISMATCHES: 18 +BIT_SCORE: 25.8 +Q_END: 206 +GAPS: 0 +S_END: 566 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 34 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 32.35 +E_VAL: 2e-04 +S_BEG: 355 +Q_BEG: 133 +MISMATCHES: 23 +BIT_SCORE: 25.8 +Q_END: 32 +GAPS: 0 +S_END: 456 +--- +STRAND: - +Q_ID: 8D5s 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+IDENT: 38.10 +E_VAL: 1.3 +S_BEG: 339 +Q_BEG: 1022 +MISMATCHES: 13 +BIT_SCORE: 20.3 +Q_END: 1084 +GAPS: 0 +S_END: 401 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 18 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 44.44 +E_VAL: 1.3 +S_BEG: 511 +Q_BEG: 150 +MISMATCHES: 10 +BIT_SCORE: 20.3 +Q_END: 97 +GAPS: 0 +S_END: 564 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 41 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 31.71 +E_VAL: 1.3 +S_BEG: 166 +Q_BEG: 447 +MISMATCHES: 28 +BIT_SCORE: 20.3 +Q_END: 569 +GAPS: 0 +S_END: 288 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 66.67 +E_VAL: 1.7 +S_BEG: 483 +Q_BEG: 816 +MISMATCHES: 3 +BIT_SCORE: 18.9 +Q_END: 842 +GAPS: 0 +S_END: 509 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 29 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 37.93 +E_VAL: 1.7 +S_BEG: 634 +Q_BEG: 737 +MISMATCHES: 18 +BIT_SCORE: 18.9 +Q_END: 823 +GAPS: 0 +S_END: 720 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 28.00 +E_VAL: 3.5 +S_BEG: 273 +Q_BEG: 352 +MISMATCHES: 18 +BIT_SCORE: 18.9 +Q_END: 278 +GAPS: 0 +S_END: 347 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 10 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 50.00 +E_VAL: 6.6 +S_BEG: 355 +Q_BEG: 40 +MISMATCHES: 5 +BIT_SCORE: 18.0 +Q_END: 11 +GAPS: 0 +S_END: 384 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 37 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 27.03 +E_VAL: 9.0 +S_BEG: 234 +Q_BEG: 385 +MISMATCHES: 27 +BIT_SCORE: 17.6 +Q_END: 275 +GAPS: 0 +S_END: 344 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 27 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 33.33 +E_VAL: 9.0 +S_BEG: 243 +Q_BEG: 358 +MISMATCHES: 18 +BIT_SCORE: 17.6 +Q_END: 278 +GAPS: 0 +S_END: 323 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 55.56 +E_VAL: 9.0 +S_BEG: 33 +Q_BEG: 709 +MISMATCHES: 4 +BIT_SCORE: 17.6 +Q_END: 683 +GAPS: 0 +S_END: 59 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 6 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 83.33 +E_VAL: 9.0 +S_BEG: 25 +Q_BEG: 832 +MISMATCHES: 1 +BIT_SCORE: 17.6 +Q_END: 815 +GAPS: 0 +S_END: 42 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 34 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 32.35 +E_VAL: 9.1 +S_BEG: 454 +Q_BEG: 474 +MISMATCHES: 23 +BIT_SCORE: 17.6 +Q_END: 575 +GAPS: 0 +S_END: 555 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 9 +S_ID: SOK19 +REC_TYPE: BLAST +IDENT: 66.67 +E_VAL: 9.1 +S_BEG: 545 +Q_BEG: 756 +MISMATCHES: 3 +BIT_SCORE: 17.6 +Q_END: 782 +GAPS: 0 +S_END: 571 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 96 +S_ID: SOK1b +REC_TYPE: BLAST +IDENT: 44.79 +E_VAL: 2e-24 +S_BEG: 4 +Q_BEG: 793 +MISMATCHES: 53 +BIT_SCORE: 99.6 +Q_END: 1080 +GAPS: 0 +S_END: 291 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 91 +S_ID: SOK1b +REC_TYPE: BLAST +IDENT: 45.05 +E_VAL: 3e-14 +S_BEG: 6 +Q_BEG: 1067 +MISMATCHES: 50 +BIT_SCORE: 65.7 +Q_END: 795 +GAPS: 0 +S_END: 278 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 61 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 59.02 +E_VAL: 1e-19 +S_BEG: 1 +Q_BEG: 889 +MISMATCHES: 25 +BIT_SCORE: 83.5 +Q_END: 1071 +GAPS: 0 +S_END: 183 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 61 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 55.74 +E_VAL: 2e-14 +S_BEG: 0 +Q_BEG: 1070 +MISMATCHES: 27 +BIT_SCORE: 66.1 +Q_END: 888 +GAPS: 0 +S_END: 182 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 58 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 29.31 +E_VAL: 2e-05 +S_BEG: 10 +Q_BEG: 1071 +MISMATCHES: 41 +BIT_SCORE: 36.3 +Q_END: 898 +GAPS: 0 +S_END: 183 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 23 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 52.17 +E_VAL: 0.030 +S_BEG: 72 +Q_BEG: 960 +MISMATCHES: 11 +BIT_SCORE: 25.8 +Q_END: 1028 +GAPS: 0 +S_END: 140 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 29 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 34.48 +E_VAL: 0.098 +S_BEG: 66 +Q_BEG: 1085 +MISMATCHES: 19 +BIT_SCORE: 21.7 +Q_END: 999 +GAPS: 0 +S_END: 152 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 6 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 83.33 +E_VAL: 0.098 +S_BEG: 21 +Q_BEG: 892 +MISMATCHES: 1 +BIT_SCORE: 21.7 +Q_END: 875 +GAPS: 0 +S_END: 38 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 25 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 36.00 +E_VAL: 0.51 +S_BEG: 135 +Q_BEG: 958 +MISMATCHES: 16 +BIT_SCORE: 21.7 +Q_END: 884 +GAPS: 0 +S_END: 209 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 8 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 62.50 +E_VAL: 0.51 +S_BEG: 207 +Q_BEG: 562 +MISMATCHES: 3 +BIT_SCORE: 20.8 +Q_END: 539 +GAPS: 0 +S_END: 230 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 22 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 36.36 +E_VAL: 0.98 +S_BEG: 12 +Q_BEG: 932 +MISMATCHES: 14 +BIT_SCORE: 20.8 +Q_END: 997 +GAPS: 0 +S_END: 77 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 23 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 43.48 +E_VAL: 1.3 +S_BEG: 71 +Q_BEG: 959 +MISMATCHES: 13 +BIT_SCORE: 20.3 +Q_END: 1027 +GAPS: 0 +S_END: 139 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 6 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 100.00 +E_VAL: 1.9 +S_BEG: 205 +Q_BEG: 36 +MISMATCHES: 0 +BIT_SCORE: 19.9 +Q_END: 53 +GAPS: 0 +S_END: 222 +--- +STRAND: + +Q_ID: 8D5s +ALIGN_LEN: 22 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 36.36 +E_VAL: 4.8 +S_BEG: 132 +Q_BEG: 200 +MISMATCHES: 14 +BIT_SCORE: 18.5 +Q_END: 265 +GAPS: 0 +S_END: 197 +--- +STRAND: - +Q_ID: 8D5s +ALIGN_LEN: 29 +S_ID: SOK15 +REC_TYPE: BLAST +IDENT: 34.48 +E_VAL: 6.6 +S_BEG: 69 +Q_BEG: 14 +MISMATCHES: 19 +BIT_SCORE: 18.0 +Q_END: 100 +GAPS: 0 +S_END: 155 +--- diff --git a/bp_test/out/read_blast_tab.out.1 b/bp_test/out/read_blast_tab.out.1 new file mode 100644 index 0000000..9d9a2fe --- /dev/null +++ b/bp_test/out/read_blast_tab.out.1 @@ -0,0 +1,135 @@ +STRAND: - +Q_ID: M1_plasmid +ALIGN_LEN: 99 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 90.91 +E_VAL: 1e-27 +S_BEG: 35876 +Q_BEG: 14021 +MISMATCHES: 9 +BIT_SCORE: 125 +Q_END: 14119 +GAPS: 0 +S_END: 35974 +--- +STRAND: + +Q_ID: M1_plasmid +ALIGN_LEN: 99 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 90.91 +E_VAL: 1e-27 +S_BEG: 76789 +Q_BEG: 14021 +MISMATCHES: 9 +BIT_SCORE: 125 +Q_END: 14119 +GAPS: 0 +S_END: 76887 +--- +STRAND: - +Q_ID: M1_plasmid +ALIGN_LEN: 170 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 85.29 +E_VAL: 1e-27 +S_BEG: 1929783 +Q_BEG: 11030 +MISMATCHES: 22 +BIT_SCORE: 125 +Q_END: 11197 +GAPS: 2 +S_END: 1929951 +--- +STRAND: - +Q_ID: M1_plasmid +ALIGN_LEN: 70 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 97.14 +E_VAL: 6e-27 +S_BEG: 1929669 +Q_BEG: 1807 +MISMATCHES: 2 +BIT_SCORE: 123 +Q_END: 1876 +GAPS: 0 +S_END: 1929738 +--- +STRAND: + +Q_ID: M1_plasmid +ALIGN_LEN: 151 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 85.43 +E_VAL: 9e-26 +S_BEG: 2265651 +Q_BEG: 26664 +MISMATCHES: 20 +BIT_SCORE: 119 +Q_END: 26812 +GAPS: 1 +S_END: 2265801 +--- +STRAND: - +Q_ID: M1_plasmid +ALIGN_LEN: 66 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 96.97 +E_VAL: 1e-24 +S_BEG: 1205138 +Q_BEG: 1807 +MISMATCHES: 2 +BIT_SCORE: 115 +Q_END: 1872 +GAPS: 0 +S_END: 1205203 +--- +STRAND: + +Q_ID: M1_plasmid +ALIGN_LEN: 138 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 86.23 +E_VAL: 1e-24 +S_BEG: 1929815 +Q_BEG: 1909 +MISMATCHES: 18 +BIT_SCORE: 115 +Q_END: 2046 +GAPS: 1 +S_END: 1929951 +--- +STRAND: - +Q_ID: M1_plasmid +ALIGN_LEN: 64 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 93.75 +E_VAL: 1e-18 +S_BEG: 443711 +Q_BEG: 1807 +MISMATCHES: 4 +BIT_SCORE: 95.6 +Q_END: 1870 +GAPS: 0 +S_END: 443774 +--- +STRAND: + +Q_ID: M1_plasmid +ALIGN_LEN: 65 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 89.23 +E_VAL: 5e-12 +S_BEG: 2680108 +Q_BEG: 16900 +MISMATCHES: 7 +BIT_SCORE: 73.8 +Q_END: 16964 +GAPS: 0 +S_END: 2680172 +--- diff --git a/bp_test/out/read_blast_tab.out.2 b/bp_test/out/read_blast_tab.out.2 new file mode 100644 index 0000000..23d63bb --- /dev/null +++ b/bp_test/out/read_blast_tab.out.2 @@ -0,0 +1,15 @@ +STRAND: - +Q_ID: M1_plasmid +ALIGN_LEN: 99 +S_ID: S.aureus_USA300_TCH1516 +REC_TYPE: BLAST +IDENT: 90.91 +E_VAL: 1e-27 +S_BEG: 35876 +Q_BEG: 14021 +MISMATCHES: 9 +BIT_SCORE: 125 +Q_END: 14119 +GAPS: 0 +S_END: 35974 +--- diff --git a/bp_test/out/write_blast.out.1 b/bp_test/out/write_blast.out.1 new file mode 100644 index 0000000..41401bc --- /dev/null +++ b/bp_test/out/write_blast.out.1 @@ -0,0 +1 @@ +M1_plasmid S.aureus_USA300_TCH1516 90.91 99 9 0 14022 14120 35975 35877 1e-27 125 diff --git a/bp_test/out/write_blast.out.2 b/bp_test/out/write_blast.out.2 new file mode 100644 index 0000000..0ba5c78 --- /dev/null +++ b/bp_test/out/write_blast.out.2 @@ -0,0 +1,2 @@ +# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score +M1_plasmid S.aureus_USA300_TCH1516 90.91 99 9 0 14022 14120 35975 35877 1e-27 125 diff --git a/bp_test/out/write_blast.out.3 b/bp_test/out/write_blast.out.3 new file mode 100644 index 0000000..41401bc --- /dev/null +++ b/bp_test/out/write_blast.out.3 @@ -0,0 +1 @@ +M1_plasmid S.aureus_USA300_TCH1516 90.91 99 9 0 14022 14120 35975 35877 1e-27 125 diff --git a/bp_test/test/test_blast_seq b/bp_test/test/test_blast_seq new file mode 100755 index 0000000..f6b6430 --- /dev/null +++ b/bp_test/test/test_blast_seq @@ -0,0 +1,28 @@ +#!/bin/bash + +source "$BP_DIR/bp_test/lib/test.sh" + +run_quiet "create_blast_index -I $in.1 -d $tmp_dir -i 'nucleotide' -x" +run_quiet "create_blast_index -I $in.3 -d $tmp_dir -i 'protein' -x" + +run "$bp -I $in.2 -d $tmp_dir/nucleotide -O $tmp" +assert_no_diff $tmp $out.1 +rm $tmp + +run "$bp -I $in.2 -d $tmp_dir/protein -O $tmp" +assert_no_diff $tmp $out.2 +rm $tmp + +run "$bp -I $in.4 -d $tmp_dir/nucleotide -O $tmp" +assert_no_diff $tmp $out.3 +rm $tmp + +run "$bp -I $in.4 -d $tmp_dir/protein -O $tmp" +assert_no_diff $tmp $out.4 +rm $tmp + +run "$bp -I $in.2 -d $tmp_dir/nucleotide -p tblastx -O $tmp" +assert_no_diff $tmp $out.5 +rm $tmp + +rm -rf $tmp_dir diff --git a/bp_test/test/test_create_blast_index b/bp_test/test/test_create_blast_index new file mode 100755 index 0000000..f7756a1 --- /dev/null +++ b/bp_test/test/test_create_blast_index @@ -0,0 +1,11 @@ +#!/bin/bash + +source "$BP_DIR/bp_test/lib/test.sh" + +run "$bp -I $in.1 -d $tmp_dir -i 'index' -x" +assert_files_exists "$tmp_dir/index.nin" "$tmp_dir/index.nhr" "$tmp_dir/index.nsq" +rm -rf $tmp_dir + +run "$bp -I $in.2 -d $tmp_dir -i 'index' -x" +assert_files_exists "$tmp_dir/index.pin" "$tmp_dir/index.phr" "$tmp_dir/index.psq" +rm -rf $tmp_dir diff --git a/bp_test/test/test_read_blast_tab b/bp_test/test/test_read_blast_tab new file mode 100755 index 0000000..cc459f8 --- /dev/null +++ b/bp_test/test/test_read_blast_tab @@ -0,0 +1,11 @@ +#!/bin/bash + +source "$BP_DIR/bp_test/lib/test.sh" + +run "$bp -i $in -O $tmp" +assert_no_diff $tmp $out.1 +rm $tmp + +run "$bp -i $in -n 1 -O $tmp" +assert_no_diff $tmp $out.2 +rm $tmp diff --git a/bp_test/test/test_write_blast b/bp_test/test/test_write_blast new file mode 100755 index 0000000..87ed9e0 --- /dev/null +++ b/bp_test/test/test_write_blast @@ -0,0 +1,16 @@ +#!/bin/bash + +source "$BP_DIR/bp_test/lib/test.sh" + +run "$bp -I $in -o $tmp -x" +assert_no_diff $tmp $out.1 +rm $tmp + +run "$bp -I $in -c -o $tmp -x" +assert_no_diff $tmp $out.2 +rm $tmp + +run "$bp -I $in -Z -o $tmp.gz -x" +gunzip $tmp.gz +assert_no_diff $tmp $out.3 +rm $tmp diff --git a/bp_test/test/test_write_fasta b/bp_test/test/test_write_fasta index ba772ca..63b1ecf 100755 --- a/bp_test/test/test_write_fasta +++ b/bp_test/test/test_write_fasta @@ -2,15 +2,15 @@ source "$BP_DIR/bp_test/lib/test.sh" -run "write_fasta -I $in -o $tmp -x" +run "$bp -I $in -o $tmp -x" assert_no_diff $tmp $out.1 rm $tmp -run "write_fasta -I $in -w 4 -o $tmp -x" +run "$bp -I $in -w 4 -o $tmp -x" assert_no_diff $tmp $out.2 rm $tmp -run "write_fasta -I $in -w 4 -Z -o $tmp.gz -x" +run "$bp -I $in -w 4 -Z -o $tmp.gz -x" gunzip $tmp.gz assert_no_diff $tmp $out.3 rm $tmp diff --git a/bp_test/test/test_write_tab b/bp_test/test/test_write_tab index b24c628..21e9e35 100755 --- a/bp_test/test/test_write_tab +++ b/bp_test/test/test_write_tab @@ -2,27 +2,27 @@ source "$BP_DIR/bp_test/lib/test.sh" -run "write_tab -I $in -o $tmp -x" +run "$bp -I $in -o $tmp -x" assert_no_diff $tmp $out.1 rm $tmp -run "write_tab -I $in -c -o $tmp -x" +run "$bp -I $in -c -o $tmp -x" assert_no_diff $tmp $out.2 rm $tmp -run "write_tab -I $in -d ',' -o $tmp -x" +run "$bp -I $in -d ',' -o $tmp -x" assert_no_diff $tmp $out.3 rm $tmp -run "write_tab -I $in -Z -o $tmp.gz -x" +run "$bp -I $in -Z -o $tmp.gz -x" gunzip $tmp.gz assert_no_diff $tmp $out.4 rm $tmp -run "write_tab -I $in -k 'Count' -o $tmp -x" +run "$bp -I $in -k 'Count' -o $tmp -x" assert_no_diff $tmp $out.5 rm $tmp -run "write_tab -I $in -K 'Count' -o $tmp -x" +run "$bp -I $in -K 'Count' -o $tmp -x" assert_no_diff $tmp $out.6 rm $tmp -- 2.39.2