From bc41bf1f0f46fbf4c6468a0bc55bdb093c496084 Mon Sep 17 00:00:00 2001
From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Thu, 17 Nov 2011 14:50:32 +0000
Subject: [PATCH] fixed bug in remove_primers
git-svn-id: http://biopieces.googlecode.com/svn/trunk@1659 74ccb610-7750-0410-82ae-013aeee3265d
---
bp_bin/remove_primers | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/bp_bin/remove_primers b/bp_bin/remove_primers
index a68fb89..4e4e2e7 100755
--- a/bp_bin/remove_primers
+++ b/bp_bin/remove_primers
@@ -56,10 +56,10 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
end
if reverse = seq.patscan(options[:reverse].to_s, pos, options[:mismatches], options[:insertions], options[:deletions])
- record[:REVERSE_POS] = reverse.last.pos
- record[:REVERSE_LEN] = reverse.last.length
- pos = reverse.last.pos
- seq.subseq!(pos)
+ record[:REVERSE_POS] = reverse.first.pos
+ record[:REVERSE_LEN] = reverse.first.length
+ pos = reverse.first.pos
+ seq.subseq!(0, pos)
end
if pos > 0
--
2.39.5