From a62ae8fdb575f309a8d60d143b9d367f620abf1e Mon Sep 17 00:00:00 2001 From: martinahansen Date: Tue, 10 May 2011 10:30:30 +0000 Subject: [PATCH] added procedure switch to analyze_assembly git-svn-id: http://biopieces.googlecode.com/svn/trunk@1393 74ccb610-7750-0410-82ae-013aeee3265d --- bp_bin/analyze_assembly | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/bp_bin/analyze_assembly b/bp_bin/analyze_assembly index 89b7b32..b30517a 100755 --- a/bp_bin/analyze_assembly +++ b/bp_bin/analyze_assembly @@ -35,9 +35,10 @@ require 'prodigal' require 'pp' casts = [] -casts << {:long=>'gene_cov', :short=>'g', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} -casts << {:long=>'no_stream', :short=>'x', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} -casts << {:long=>'data_out', :short=>'o', :type=>'file', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} +casts << {:long=>'gene_cov', :short=>'g', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} +casts << {:long=>'full', :short=>'p', :type=>'procedure', :mandatory=>true, :default=>'single', :allowed=>'single,meta', :disallowed=>nil} +casts << {:long=>'no_stream', :short=>'x', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} +casts << {:long=>'data_out', :short=>'o', :type=>'file', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} bp = Biopieces.new -- 2.39.2