From a10d9aff5e1cd39c39ab696f8a9b6c759db2adeb Mon Sep 17 00:00:00 2001
From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Thu, 23 Jul 2009 12:33:52 +0000
Subject: [PATCH] added verbose stuff to bowtie_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@583 74ccb610-7750-0410-82ae-013aeee3265d
---
 bp_bin/bowtie_seq | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/bp_bin/bowtie_seq b/bp_bin/bowtie_seq
index 849dbf2..aedf02a 100755
--- a/bp_bin/bowtie_seq
+++ b/bp_bin/bowtie_seq
@@ -94,9 +94,13 @@ if ( defined $options->{ 'max_hits' } ) {
 
 $arg = join " ", @args;
 
-if ( $options->{ 'verbose' } ) {
+if ( $options->{ 'verbose' } )
+{
+    print STDERR qq(Running: bowtie $arg $index $tmp_in $tmp_out\n);
     Maasha::Common::run( "bowtie", "$arg $index $tmp_in $tmp_out" );
-} else {
+}
+else
+{
     Maasha::Common::run( "bowtie", "$arg $index $tmp_in $tmp_out > /dev/null 2>&1" );
 }
 
-- 
2.39.5