From 9b565441795bf80072efe494918e76cc5dab3dc6 Mon Sep 17 00:00:00 2001
From: Don Armstrong <don@donarmstrong.com>
Date: Mon, 20 Mar 2017 19:24:14 -0700
Subject: [PATCH] add kinetic parameters
---
kinetic_formalism_competition.Rnw | 32 +++++++++++++++----------------
1 file changed, 16 insertions(+), 16 deletions(-)
diff --git a/kinetic_formalism_competition.Rnw b/kinetic_formalism_competition.Rnw
index 2a47cf4..c008d79 100644
--- a/kinetic_formalism_competition.Rnw
+++ b/kinetic_formalism_competition.Rnw
@@ -153,22 +153,22 @@ kf <- (as.numeric(kf.prime)*10^-3)/(63e-20*6.022e23)
Each of the 5 lipid types has different kinetic parameters; where
available, these were taken from literature.
-% \begin{table}
-% \centering
-% \begin{tabular}{c c c c c c c c}
-% \toprule
-% Type & $k_\mathrm{f}$ $\left(\frac{\mathrm{m}}{\mathrm{s}}\right)$ & $k'_\mathrm{f}$ $\left(\frac{1}{\mathrm{M} \mathrm{s}}\right)$ & $k_\mathrm{b}$ $\left(\mathrm{s}^{-1}\right)$ & Area $\left({Ã
}^2\right)$ & Charge & $\mathrm{CF}1$ & Curvature \\
-% \midrule
-% PC & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[1]))}$ & $3.7 \times 10^6$ & $2 \times 10^{-5}$ & 63 & 0 & 2 & 0.8 \\
-% PS & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[2]))}$ & $3.7 \times 10^6$ & $1.25\times 10^{-5}$ & 54 & -1 & 0 & 1 \\
-% CHOL & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[3]))}$ & $5.1 \times 10^7$ & $2.8 \times 10^{-4}$ & 38 & 0 & -1 & 1.21 \\
-% SM & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[4]))}$ & $3.7 \times 10^6$ & $3.1 \times 10^{-3}$ & 61 & 0 & 3 & 0.8 \\
-% PE & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[5]))}$ & $2.3 \times 10^6$ & $1 \times 10^{-5}$ & 55 & 0 & 0 & 1.33 \\
-% \bottomrule
-% \end{tabular}
-% \caption{Kinetic parameters and molecular properties of lipid types}
-% \label{tab:kinetic_parameters_lipid_types}
-% \end{table}
+\begin{table}
+ \centering
+ \begin{tabular}{c c c c c c c c}
+ \toprule
+ Type & $k_\mathrm{f}$ $\left(\frac{\mathrm{m}}{\mathrm{s}}\right)$ & $k'_\mathrm{f}$ $\left(\frac{1}{\mathrm{M} \mathrm{s}}\right)$ & $k_\mathrm{b}$ $\left(\mathrm{s}^{-1}\right)$ & Area $\left({Ã
}^2\right)$ & Charge & $\mathrm{CF}1$ & Curvature \\
+ \midrule
+ PC & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[1]))}$ & $3.7 \times 10^6$ & $2 \times 10^{-5}$ & 63 & 0 & 2 & 0.8 \\
+ PS & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[2]))}$ & $3.7 \times 10^6$ & $1.25\times 10^{-5}$ & 54 & -1 & 0 & 1 \\
+ CHOL & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[3]))}$ & $5.1 \times 10^7$ & $2.8 \times 10^{-4}$ & 38 & 0 & -1 & 1.21 \\
+ SM & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[4]))}$ & $3.7 \times 10^6$ & $3.1 \times 10^{-3}$ & 61 & 0 & 3 & 0.8 \\
+ PE & $\Sexpr{to.latex(format(digits=3,scientific=TRUE,kf[5]))}$ & $2.3 \times 10^6$ & $1 \times 10^{-5}$ & 55 & 0 & 0 & 1.33 \\
+ \bottomrule
+ \end{tabular}
+ \caption{Kinetic parameters and molecular properties of lipid types}
+ \label{tab:kinetic_parameters_lipid_types}
+\end{table}
%%% \DLA{I think we may just reduce these three sections; area, $k_\mathrm{f}$
%%% and $k_\mathrm{b}$ to \cref{tab:kinetic_parameters_lipid_types} with
--
2.39.5