From 975245ceaed44110c385764241a55853de418c06 Mon Sep 17 00:00:00 2001
From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 31 Oct 2012 21:21:52 +0000
Subject: [PATCH] changed order_pairs2 to gdbm

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1978 74ccb610-7750-0410-82ae-013aeee3265d
---
 bp_bin/order_pairs2 | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/bp_bin/order_pairs2 b/bp_bin/order_pairs2
index b816366..473f14e 100755
--- a/bp_bin/order_pairs2
+++ b/bp_bin/order_pairs2
@@ -29,7 +29,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 require 'maasha/biopieces'
-require 'dbm'
+require 'gdbm'
 require 'pp'
 
 ILLUMINA15 = 15
@@ -38,10 +38,10 @@ ILLUMINA18 = 18
 options = Biopieces.options_parse(ARGV)
 
 tmpdir  = Biopieces.mktmpdir
-#tmpdir  = "Sletmig"
+tmpdir  = "Sletmig"
 tmpfile = File.join(tmpdir, "data")
 
-db = DBM.new(tmpfile)
+db = GDBM.new(tmpfile)
 
 Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
   input.each_record do |record|
@@ -97,7 +97,9 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
   end
 end
 
-File.delete(tmpfile + ".db")
+db.close
+
+FileUtils.remove_entry_secure("#{tmpfile}.db", true)
 
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
-- 
2.39.5