From 8c572d5e8bf807c65a7b08383dab3b644aa14842 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Mon, 21 Nov 2011 10:35:59 +0000 Subject: [PATCH] made --rev defacto in useach_seq git-svn-id: http://biopieces.googlecode.com/svn/trunk@1673 74ccb610-7750-0410-82ae-013aeee3265d --- bp_bin/usearch_seq | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/bp_bin/usearch_seq b/bp_bin/usearch_seq index 5cac949..9bd3d46 100755 --- a/bp_bin/usearch_seq +++ b/bp_bin/usearch_seq @@ -82,7 +82,7 @@ class Usearch # The command is composed of bits from the @command variable. def execute @command.unshift "nice -n 19" - @command << "--rev" if @options[:comp] + @command << "--rev" @command << "> /dev/null 2>&1" unless @options[:verbose] command = @command.join(" ") system(command) @@ -94,7 +94,6 @@ end casts = [] casts << {:long=>'database', :short=>'d', :type=>'file!', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} -casts << {:long=>'comp', :short=>'c', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} casts << {:long=>'identity', :short=>'i', :type=>'float', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} casts << {:long=>'e_val', :short=>'e', :type=>'float', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} -- 2.39.2