From 7edc1d316dd2448e751284444f9f653a3d98e559 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Mon, 25 Jun 2012 09:04:40 +0000 Subject: [PATCH] added max_diversity swith to findsim.rb git-svn-id: http://biopieces.googlecode.com/svn/trunk@1846 74ccb610-7750-0410-82ae-013aeee3265d --- bp_bin/findsim_seq | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bp_bin/findsim_seq b/bp_bin/findsim_seq index 5622cec..183bae5 100755 --- a/bp_bin/findsim_seq +++ b/bp_bin/findsim_seq @@ -39,7 +39,7 @@ casts << {:long=>'kmer', :short=>'k', :type=>'uint', :mandatory=>false casts << {:long=>'step', :short=>'s', :type=>'uint', :mandatory=>false, :default=>1, :allowed=>nil, :disallowed=>"0"} casts << {:long=>'min_score', :short=>'m', :type=>'float', :mandatory=>false, :default=>0.5, :allowed=>nil, :disallowed=>nil} casts << {:long=>'max_hits', :short=>'h', :type=>'uint', :mandatory=>false, :default=>7, :allowed=>nil, :disallowed=>"0"} -casts << {:long=>'max_diversity', :short=>'h', :type=>'uint', :mandatory=>false, :default=>5, :allowed=>nil, :disallowed=>nil} +casts << {:long=>'max_diversity', :short=>'M', :type=>'uint', :mandatory=>false, :default=>5, :allowed=>nil, :disallowed=>nil} casts << {:long=>'query_ids', :short=>'Q', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} casts << {:long=>'subject_ids', :short=>'S', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} casts << {:long=>'realign', :short=>'r', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} -- 2.39.5