From 7594006bf26f7971ba3f95c81bf7ae873195fb9a Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko Date: Wed, 24 Apr 2013 13:17:04 -0400 Subject: [PATCH] RF: replace old-fashioned neurodebian.cfg with neurodebian_repo.cfg --- Makefile | 2 +- neurodebian.cfg | 181 +++++++++---------------------------------- neurodebian_repo.cfg | 90 --------------------- 3 files changed, 36 insertions(+), 237 deletions(-) delete mode 100644 neurodebian_repo.cfg diff --git a/Makefile b/Makefile index 5f4732e..124f837 100644 --- a/Makefile +++ b/Makefile @@ -4,7 +4,7 @@ WWW_DIR = build/html/ WWW_UPLOAD_URI_STATIC=$(WWW_UPLOAD_URI)/_static -BIGMESS_OPTS = -c neurodebian_repo.cfg +BIGMESS_OPTS = -c neurodebian.cfg BIGMESS_CMD = PYTHONPATH=.:3rd/bigmess:$(PYTHONPATH) 3rd/bigmess/bin/bigmess BIGMESS = $(BIGMESS_CMD) $(BIGMESS_OPTS) diff --git a/neurodebian.cfg b/neurodebian.cfg index 541206d..ca78e58 100644 --- a/neurodebian.cfg +++ b/neurodebian.cfg @@ -1,72 +1,3 @@ -[dde] -pkgquery_url = http://dde.debian.net/dde/q/udd - -[packages] -# Packages listed in the following taskfiles will be featured on the website -# _if_ they are also present in the repository -select taskfiles = - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics - svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging - svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev - svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/psychology - -# Additional selection filter (similar to 'select taskfiles'), only listing -# package names -select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx - r-cran-glmnet python-rpy2 python-nibabel-snapshot - python-sklearn python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab-support - svgtune rorden-mri-tutorial caret-data python-joblib python-sphinx fail2ban - python-pandas python-skimage neurodebian numdiff nuitka pytables - guacamole freeipmi remake vowpal-wabbit tigervnc - -# Information about prospective packages to be imported from taskfiles -prospective = - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling - svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics - svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging - svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev - -[blend package aliases] -# alias a package name from a blend taskfile to an arbitray number of additional -# package names -- if the original name should appear in the package list it has -# to be added as an alias as well -cctools = coop-computing-tools -mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c -eeglab = matlab-eeglab11 eeglab11-sampledata -fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates -fslview = fslview fslview-doc -python-mvpa = python-mvpa python-mvpa2 -libgiftiio-dev = libgiftiio-dev gifti-bin -openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1 -libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0 -libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf -spm8 = matlab-spm8 spm8-data spm8-doc -libfreenect-dev = libfreenect0.0 libfreenect-dev libfreenect-demos python-freenect freenect -psychtoolbox-3 = octave-psychtoolbox-3 matlab-psychtoolbox-3 psychtoolbox-3-doc -openmeeg = libopenmeeg-dev libopenmeeg1 openmeeg-tools python-openmeeg -pandas = python-pandas -pysurfer = python-surfer -pyxnat = python-pyxnat -openwalnut = openwalnut-qt4 -neurodebian = neurodebian-dev neurodebian-desktop neurodebian-keyring neurodebian-popularity-contest neurodebian-guest-additions -pytables = python-tables -isis = isis-utils libisis-core-dev python-isis libisis-ioplugins-common libisis-ioplugins-dicom libisis-qt4-dev -guacamole = guacamole guacd libguac-dev libguac3 libguac-client-rdp guacamole-tomcat libguac-client-vnc0 -neo = python-neo -openvibe = openvibe-bin openvibe-data openvibe-dev openvibe-libs openvibe-plugins -tigervnc = tigervnc-viewer tigervnc-xorg-extension tigervnc-standalone-server tigervnc-scraping-server tigervnc-common - [mirrors] au = http://mirror.aarnet.edu.au/pub/neurodebian de-m = http://neurodebian.g-node.org @@ -91,25 +22,36 @@ us-ca = USA-CA (Paul Ivanov, California) us-nh = USA-NH (Dartmouth College) us-tn = USA-TN (Vanderbilt) -[neurodebian] +[release files] # Release files of all repositories to be contained in the website -# Package info files for all these releases will be downloaded. A long list -# of releases makes a website update a lot slower -releases = - http://neuro.debian.net/debian/dists/data/Release - http://neuro.debian.net/debian/dists/hardy/Release - http://neuro.debian.net/debian/dists/karmic/Release - http://neuro.debian.net/debian/dists/lucid/Release - http://neuro.debian.net/debian/dists/maverick/Release - http://neuro.debian.net/debian/dists/natty/Release - http://neuro.debian.net/debian/dists/oneiric/Release - http://neuro.debian.net/debian/dists/precise/Release - http://neuro.debian.net/debian/dists/quantal/Release - http://neuro.debian.net/debian/dists/squeeze/Release - http://neuro.debian.net/debian/dists/wheezy/Release - http://neuro.debian.net/debian/dists/sid/Release +# Package info files for all these releases will be downloaded. +data = http://neuro.debian.net/debian/dists/data/Release +hardy = http://neuro.debian.net/debian/dists/hardy/Release +#EOL karmic = http://neuro.debian.net/debian/dists/karmic/Release +lucid = http://neuro.debian.net/debian/dists/lucid/Release +#EOL maverick = http://neuro.debian.net/debian/dists/maverick/Release +#EOL natty = http://neuro.debian.net/debian/dists/natty/Release +oneiric = http://neuro.debian.net/debian/dists/oneiric/Release +precise = http://neuro.debian.net/debian/dists/precise/Release +quantal = http://neuro.debian.net/debian/dists/quantal/Release +squeeze = http://neuro.debian.net/debian/dists/squeeze/Release +wheezy = http://neuro.debian.net/debian/dists/wheezy/Release +sid = http://neuro.debian.net/debian/dists/sid/Release -[release codenames] +[release bases] +debian = http://amd64-geomirror.debian.net/debian +ubuntu = http://de.archive.ubuntu.com/ubuntu + +[task files] +datasets = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/datasets +distributedcomputing = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/distributedcomputing +education = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/education +electrophysiology = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/electrophysiology +mri = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/mri +neuralmodeling = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/neuralmodeling +psychophysics = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/psychophysics + +[release names] # each item here will result in the respective release being advertised # on the website, i.e. sources.list being available and config form contains # a corresponding item -- please prune an entry when a release is no longer @@ -117,7 +59,7 @@ releases = # the 'data' entry should not be changed, as this exact setting also serves as # a test condition in the DDE code data = Datasets (data) -#etch = Debian GNU/Linux 4.0 (etch) +etch = Debian GNU/Linux 4.0 (etch) lenny = Debian GNU/Linux 5.0 (lenny) squeeze = Debian GNU/Linux 6.0 (squeeze) wheezy = Debian testing (wheezy) @@ -125,7 +67,7 @@ sid = Debian unstable (sid) # EOL: May 12 2011 (Desktop) April 2013 (Server) hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy) # EOL: Oct 23 2010 -#jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty) +jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty) # EOL: April 2011 karmic = Ubuntu 09.10 "Karmic Koala" (karmic) # EOL: April 2013 (Desktop) April 2015 (Server) @@ -141,61 +83,8 @@ precise = Ubuntu 12.04 LTS "Precise Pangolin" (precise) # EOL: April 2014 quantal = Ubuntu 12.10 "Quantal Quetzal" (quantal) -[release backport ids] -# the purpose of these ids is to have version suffixes for backported packages -# that allow proper sorting (upgradability) across distribution releases -# For Debian we'll use ndXX (where XX is the version of the Debian release, -# e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX. -data = nd -etch = nd40 -lenny = nd50 -squeeze = nd60 -wheezy = nd70 -sid = nd -hardy = nd08.04 -intrepid = nd08.10 -jaunty = nd09.04 -karmic = nd09.10 -lucid = nd10.04 -maverick = nd10.10 -natty = nd11.04 -oneiric = nd11.10 -precise = nd12.04 -quantal = nd12.10 - -[nitrc ids] -afni = 23 -ants = 130 -camino = 253 -caret = 34 -cmtk = 212 -connectomeviewer = 355 -dicomnifti = 218 -fsl = 25 -fslview = 25 -gifti-bin = 75 -imagej = 256 -itksnap = 110 -jist = 228 -libminc-dev = 129 -libgiftiio-dev = 75 -libnifti2 = 26 -libnifti-dev = 26 -matlab-spm8 = 24 -minc-tools = 129 -mipav = 70 -mitools = 153 -mricron = 152 -mrtrix = 128 -nifti-bin = 26 -odin = 153 -python-mvpa = 162 -python-nipype = 325 -python-surfer = 517 -python-pyxnat = 453 -slicer = 50 -spm8 = 24 -voxbo = 73 -openmeeg = 514 -bioimagesuite = 51 - +[metadata] +# base url: // +source extracts baseurl = http://neuro.debian.net/debian/extracts +# files to query +source extracts filenames = upstream README.Debian copyright diff --git a/neurodebian_repo.cfg b/neurodebian_repo.cfg deleted file mode 100644 index ca78e58..0000000 --- a/neurodebian_repo.cfg +++ /dev/null @@ -1,90 +0,0 @@ -[mirrors] -au = http://mirror.aarnet.edu.au/pub/neurodebian -de-m = http://neurodebian.g-node.org -de-md = http://neurodebian.ovgu.de/debian -de-v = http://nd.zetatech.org -gr = http://neurobot.bio.auth.gr/neurodebian -jp = http://neuroimaging.sakura.ne.jp/neurodebian -ua = http://www.neuro.webdisk.com.ua -us-ca = http://neurodeb.pirsquared.org -us-nh = http://neuro.debian.net/debian -us-tn = http://masi.vuse.vanderbilt.edu/neurodebian - -[mirror names] -au = Australia (AARNET) -de-m = Germany (G-Node, LMU Munich) -de-md = Germany (University of Magdeburg) -de-v = Germany (Nikolaus Valentin Haenel, Vogtland) -gr = Greece (Aristotle University of Thessaloniki) -jp = Japan (Kiyotaka Nemoto) -ua = Ukraine (Iaroslav Iurchenko) -us-ca = USA-CA (Paul Ivanov, California) -us-nh = USA-NH (Dartmouth College) -us-tn = USA-TN (Vanderbilt) - -[release files] -# Release files of all repositories to be contained in the website -# Package info files for all these releases will be downloaded. -data = http://neuro.debian.net/debian/dists/data/Release -hardy = http://neuro.debian.net/debian/dists/hardy/Release -#EOL karmic = http://neuro.debian.net/debian/dists/karmic/Release -lucid = http://neuro.debian.net/debian/dists/lucid/Release -#EOL maverick = http://neuro.debian.net/debian/dists/maverick/Release -#EOL natty = http://neuro.debian.net/debian/dists/natty/Release -oneiric = http://neuro.debian.net/debian/dists/oneiric/Release -precise = http://neuro.debian.net/debian/dists/precise/Release -quantal = http://neuro.debian.net/debian/dists/quantal/Release -squeeze = http://neuro.debian.net/debian/dists/squeeze/Release -wheezy = http://neuro.debian.net/debian/dists/wheezy/Release -sid = http://neuro.debian.net/debian/dists/sid/Release - -[release bases] -debian = http://amd64-geomirror.debian.net/debian -ubuntu = http://de.archive.ubuntu.com/ubuntu - -[task files] -datasets = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/datasets -distributedcomputing = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/distributedcomputing -education = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/education -electrophysiology = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/electrophysiology -mri = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/mri -neuralmodeling = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/neuralmodeling -psychophysics = http://anonscm.debian.org/gitweb/?p=pkg-exppsy/neurodebian-blend.git;a=blob_plain;f=tasks/psychophysics - -[release names] -# each item here will result in the respective release being advertised -# on the website, i.e. sources.list being available and config form contains -# a corresponding item -- please prune an entry when a release is no longer -# supported -# the 'data' entry should not be changed, as this exact setting also serves as -# a test condition in the DDE code -data = Datasets (data) -etch = Debian GNU/Linux 4.0 (etch) -lenny = Debian GNU/Linux 5.0 (lenny) -squeeze = Debian GNU/Linux 6.0 (squeeze) -wheezy = Debian testing (wheezy) -sid = Debian unstable (sid) -# EOL: May 12 2011 (Desktop) April 2013 (Server) -hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy) -# EOL: Oct 23 2010 -jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty) -# EOL: April 2011 -karmic = Ubuntu 09.10 "Karmic Koala" (karmic) -# EOL: April 2013 (Desktop) April 2015 (Server) -lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid) -# EOL: April 2012 -maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick) -# EOL: October 2012 -natty = Ubuntu 11.04 "Natty Narwhal" (natty) -# EOL: April 2013 -oneiric = Ubuntu 11.10 "Oneiric Ocelot" (oneiric) -# EOL: April 2017 (LTS) -precise = Ubuntu 12.04 LTS "Precise Pangolin" (precise) -# EOL: April 2014 -quantal = Ubuntu 12.10 "Quantal Quetzal" (quantal) - -[metadata] -# base url: // -source extracts baseurl = http://neuro.debian.net/debian/extracts -# files to query -source extracts filenames = upstream README.Debian copyright -- 2.39.2