From 710e372b17e16f4a7cb5cc999bbbbfc49edfae26 Mon Sep 17 00:00:00 2001
From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 4 Aug 2010 13:24:43 +0000
Subject: [PATCH] polishing ruby code

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1032 74ccb610-7750-0410-82ae-013aeee3265d
---
 code_ruby/Maasha/lib/biopieces.rb | 83 ++++++-------------------------
 1 file changed, 15 insertions(+), 68 deletions(-)

diff --git a/code_ruby/Maasha/lib/biopieces.rb b/code_ruby/Maasha/lib/biopieces.rb
index 9c48992..6af2ad0 100644
--- a/code_ruby/Maasha/lib/biopieces.rb
+++ b/code_ruby/Maasha/lib/biopieces.rb
@@ -4,19 +4,6 @@ require 'optparse'
 require 'open3'
 require 'pp'
 
-@exit_status = nil
-
-%w( INT TERM QUIT ).each do |signal|
-  Signal.trap(signal) do
-    exit_status = signal
-    exit
-  end
-end
-
-at_exit {
-  pp @exit_status
-}
-
 # Biopieces are command line scripts and uses OptionParser to parse command line
 # options according to a list of casts. Each cast prescribes the long and short
 # name of the option, the type, if it is mandatory, the default value, and allowed
@@ -35,7 +22,6 @@ class Biopieces
     @output = output
     @status = Status.new
     @status.set unless @test
-    #prime_teardown
   end
 
   # Check the integrity of a list of casts, followed by parsion options from argv
@@ -95,7 +81,11 @@ class Biopieces
     path
   end
 
-  def prime_teardown
+  # Stuff to be done at begin such as setting the exit status
+  # and signal handlers
+  def self.do_at_begin
+    status = Status.new
+    status.set
     exit_status = "OK"
 
     # Install signal handlers
@@ -106,12 +96,18 @@ class Biopieces
       end
     end
 
+    exit_status
+  end
+
+  # Make sure that file streams are closed, tmpdir removed, and
+  # exit status is written to log file.
+  def self.do_at_exit(exit_status)
     at_exit do
       begin
-        @in.close  if @in.respond_to?  :close
-        @out.close if @out.respond_to? :close
-
+        @in.close  if @in.respond_to?  :close  # FIXME: This can never work
+        @out.close if @out.respond_to? :close  # FIXME: Same
       rescue Exception => exception
+        $stderr.puts "Exception caught!"   # DEBUG
         case exit_status
         when 'INT'  then exit_status = 'INTERRUPTED'
         when 'TERM' then exit_status = 'TERMINATED'
@@ -119,12 +115,12 @@ class Biopieces
         exit_status = "DIED" unless exit_status =~ /INT|TERM|QUIT/
         $stderr.puts exit_status
         $stderr.puts exception.backtrace
-
       ensure
         status = Status.new
         FileUtils.remove_entry_secure(status.get_tmpdir)
         status.log(exit_status)
         status.delete
+        puts "EXIT STATUS: #{exit_status}"
       end
     end
   end
@@ -632,53 +628,4 @@ class Stream < IO
 end
 
 
-# Stuff to be done at begin such as setting the exit status
-# and signal handlers
-def do_at_begin
-  status = Status.new
-  status.set
-  exit_status = "OK"
-
-  # Install signal handlers
-  %w( INT TERM QUIT ).each do |signal| 
-    Signal.trap(signal) do
-      exit_status = signal
-      exit
-    end
-  end
-
-  exit_status
-end
-
-# Make sure that file streams are closed, tmpdir removed, and
-# exit status is written to log file.
-def do_at_exit(exit_status)
-  at_exit do
-    begin
-      @in.close  if @in.respond_to?  :close
-      @out.close if @out.respond_to? :close
-    rescue Exception => exception
-      $stderr.puts "Exception caught!"   # DEBUG
-      case exit_status
-      when 'INT'  then exit_status = 'INTERRUPTED'
-      when 'TERM' then exit_status = 'TERMINATED'
-      end
-      exit_status = "DIED" unless exit_status =~ /INT|TERM|QUIT/
-      $stderr.puts exit_status
-      $stderr.puts exception.backtrace
-
-    ensure
-      status = Status.new
-      FileUtils.remove_entry_secure(status.get_tmpdir)
-      status.log(exit_status)
-      status.delete
-      puts "EXIT STATUS: #{exit_status}"
-    end
-  end
-end
-
-exit_status = do_at_begin
-do_at_exit(exit_status)
-
-
 __END__
-- 
2.39.5