From 6fa1725004b26c0af737a684462a55c40dcb11a4 Mon Sep 17 00:00:00 2001
From: westcott <westcott>
Date: Tue, 26 Apr 2011 11:45:58 +0000
Subject: [PATCH] blast queryName=templateSeq name bug

---
 maligner.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/maligner.cpp b/maligner.cpp
index 1fd27f9..5ea41fc 100644
--- a/maligner.cpp
+++ b/maligner.cpp
@@ -727,7 +727,7 @@ vector<Sequence*> Maligner::getBlastSeqs(Sequence* q, int num) {
 			lasti++;			
 		}
 		
-		numWanted = seen.size();
+		numWanted = mergedResults.size();
 		
 		if (mergedResults.size() < numWanted) { numWanted = mergedResults.size(); }
 //cout << q->getName() << " merged results size = " << mergedResults.size() << '\t' << "numwanted = " << numWanted <<  endl;		
-- 
2.39.5