From 652917ae712661f5679addc6e0f087c342a20167 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Tue, 8 May 2012 11:08:31 +0000 Subject: [PATCH] reverted findsim_seq and renamed precise switch to realign git-svn-id: http://biopieces.googlecode.com/svn/trunk@1817 74ccb610-7750-0410-82ae-013aeee3265d --- bp_bin/findsim_seq | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bp_bin/findsim_seq b/bp_bin/findsim_seq index f12a188..fec7772 100755 --- a/bp_bin/findsim_seq +++ b/bp_bin/findsim_seq @@ -41,7 +41,7 @@ casts << {:long=>'min_score', :short=>'m', :type=>'float', :mandatory=>false, casts << {:long=>'max_hits', :short=>'h', :type=>'uint', :mandatory=>false, :default=>7, :allowed=>nil, :disallowed=>"0"} casts << {:long=>'query_ids', :short=>'Q', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} casts << {:long=>'subject_ids', :short=>'S', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} -casts << {:long=>'precise', :short=>'p', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} +casts << {:long=>'realign', :short=>'r', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} options = Biopieces.options_parse(ARGV, casts) tmpdir = Biopieces.mktmpdir -- 2.39.5