From 5e4f217771644a45d3f866fafb1c21b0568a8ed8 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Wed, 30 May 2012 11:41:17 +0000 Subject: [PATCH] fixed bug in sff.rb clip and mask methods git-svn-id: http://biopieces.googlecode.com/svn/trunk@1834 74ccb610-7750-0410-82ae-013aeee3265d --- code_ruby/lib/maasha/sff.rb | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/code_ruby/lib/maasha/sff.rb b/code_ruby/lib/maasha/sff.rb index 2eb9c93..b0ec738 100644 --- a/code_ruby/lib/maasha/sff.rb +++ b/code_ruby/lib/maasha/sff.rb @@ -226,6 +226,8 @@ class Read right = self.bases[self.clip_qual_right ... self.bases.length].downcase self.bases = left + middle + right + + self end # Method that clips sequence (i.e. trims) according to @@ -233,6 +235,8 @@ class Read def clip self.bases = self.bases[self.clip_qual_left - 1 ... self.clip_qual_right] self.quality_scores = self.quality_scores[self.clip_qual_left - 1 ... self.clip_qual_right] + + self end private -- 2.39.5