From 5b88d637fc5ae12085847b35271ffa82ccc3b221 Mon Sep 17 00:00:00 2001
From: paradis <paradis@6e262413-ae40-0410-9e79-b911bd7a66b7>
Date: Tue, 19 May 2009 13:10:25 +0000
Subject: [PATCH] new c.DNAbin()
git-svn-id: https://svn.mpl.ird.fr/ape/dev/ape@74 6e262413-ae40-0410-9e79-b911bd7a66b7
---
ChangeLog | 5 +++++
DESCRIPTION | 2 +-
R/DNA.R | 5 ++++-
man/DNAbin.Rd | 4 +++-
4 files changed, 13 insertions(+), 3 deletions(-)
diff --git a/ChangeLog b/ChangeLog
index 9191a65..accd346 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,6 +1,11 @@
CHANGES IN APE VERSION 2.3-1
+NEW FEATURES
+
+ o There is now a c() method for lists of class "DNAbin".
+
+
BUG FIXES
o dist.gene() failed on most occasions with the default
diff --git a/DESCRIPTION b/DESCRIPTION
index 54665c2..7f69fe2 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
Package: ape
Version: 2.3-1
-Date: 2009-05-13
+Date: 2009-05-19
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Gangolf Jobb, Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
diff --git a/R/DNA.R b/R/DNA.R
index 7599265..b73d795 100644
--- a/R/DNA.R
+++ b/R/DNA.R
@@ -1,4 +1,4 @@
-## DNA.R (2009-05-10)
+## DNA.R (2009-05-19)
## Manipulations and Comparisons of DNA Sequences
@@ -142,6 +142,9 @@ cbind.DNAbin <-
ans
}
+c.DNAbin <- function(..., recursive = FALSE)
+ structure(NextMethod("c"), class = "DNAbin")
+
print.DNAbin <- function(x, ...)
{
n <- 1 # <- if is.vector(x)
diff --git a/man/DNAbin.Rd b/man/DNAbin.Rd
index 87ec965..a191f99 100644
--- a/man/DNAbin.Rd
+++ b/man/DNAbin.Rd
@@ -19,13 +19,14 @@
quiet = FALSE)
\method{[}{DNAbin}(x, i, j, drop = TRUE)
\method{as.matrix}{DNAbin}(x, \dots)
+\method{c}{DNAbin}(\dots, recursive = FALSE)
}
\arguments{
\item{x, object}{an object of class \code{"DNAbin"}.}
\item{\dots}{either further arguments to be passed to or from other
methods in the case of \code{print}, \code{summary}, and
\code{as.matrix}, or a series of objects of class \code{"DNAbin"} in
- the case of \code{rbind} and \code{cbind}.}
+ the case of \code{rbind}, \code{cbind}, and \code{c}.}
\item{printlen}{the number of labels to print (6 by default).}
\item{digits}{the number of digits to print (3 by default).}
\item{check.names}{a logical specifying whether to check the rownames
@@ -41,6 +42,7 @@
standard R objects).}
\item{drop}{logical; if \code{TRUE} (the default), the returned object
is of the lowest possible dimension.}
+ \item{recursive}{for compatibility with the generic (unused).}
}
\details{
These are all `methods' of generic functions which are here applied to
--
2.39.5