From 5aed4676ad1bf35abbade6215ac90ee591e6d8fe Mon Sep 17 00:00:00 2001 From: martinahansen Date: Wed, 8 Jul 2009 08:47:04 +0000 Subject: [PATCH] changed shebang git-svn-id: http://biopieces.googlecode.com/svn/trunk@557 74ccb610-7750-0410-82ae-013aeee3265d --- bp_bin/add_ident | 2 +- bp_bin/align_pair_seq | 2 +- bp_bin/align_seq | 2 +- bp_bin/analyze_bed | 2 +- bp_bin/analyze_seq | 2 +- bp_bin/analyze_tags | 2 +- bp_bin/analyze_vals | 2 +- bp_bin/assemble_tag_contigs | 2 +- bp_bin/bioscript | 2 +- bp_bin/biostat | 2 +- bp_bin/blast_seq | 2 +- bp_bin/blat_seq | 2 +- bp_bin/calc_bit_scores | 2 +- bp_bin/calc_fixedstep | 2 +- bp_bin/complement_seq | 2 +- bp_bin/compute | 2 +- bp_bin/count_records | 2 +- bp_bin/count_vals | 2 +- bp_bin/create_blast_db | 2 +- bp_bin/create_vmatch_index | 2 +- bp_bin/create_weight_matrix | 2 +- bp_bin/extract_seq | 2 +- bp_bin/flip_tab | 2 +- bp_bin/fold_seq | 2 +- bp_bin/format_genome | 2 +- bp_bin/get_genome_align | 2 +- bp_bin/get_genome_phastcons | 2 +- bp_bin/get_genome_seq | 2 +- bp_bin/grab | 2 +- bp_bin/head_records | 2 +- bp_bin/indel_seq | 2 +- bp_bin/invert_align | 2 +- bp_bin/length_seq | 2 +- bp_bin/length_vals | 2 +- bp_bin/list_biopieces | 2 +- bp_bin/list_genomes | 2 +- bp_bin/match_seq | 2 +- bp_bin/max_vals | 2 +- bp_bin/mean_vals | 2 +- bp_bin/median_vals | 2 +- bp_bin/merge_records | 2 +- bp_bin/merge_vals | 2 +- bp_bin/min_vals | 2 +- bp_bin/mutate_seq | 2 +- bp_bin/oligo_freq | 2 +- bp_bin/patscan_seq | 2 +- bp_bin/plot_chrdist | 2 +- bp_bin/plot_histogram | 2 +- bp_bin/plot_karyogram | 2 +- bp_bin/plot_lendist | 2 +- bp_bin/plot_matches | 2 +- bp_bin/plot_phastcons_profiles | 2 +- bp_bin/plot_seqlogo | 2 +- bp_bin/print_wiki | 2 +- bp_bin/random_records | 2 +- bp_bin/read_2bit | 2 +- bp_bin/read_bed | 2 +- bp_bin/read_blast_tab | 2 +- bp_bin/read_embl | 2 +- bp_bin/read_fasta | 2 +- bp_bin/read_fixedstep | 2 +- bp_bin/read_gff | 2 +- bp_bin/read_mysql | 2 +- bp_bin/read_psl | 2 +- bp_bin/read_soft | 2 +- bp_bin/read_solexa | 2 +- bp_bin/read_solid | 2 +- bp_bin/read_stockholm | 2 +- bp_bin/read_tab | 2 +- bp_bin/read_ucsc_config | 2 +- bp_bin/remove_adaptor | 2 +- bp_bin/remove_indels | 2 +- bp_bin/remove_keys | 2 +- bp_bin/remove_mysql_tables | 2 +- bp_bin/remove_ucsc_tracks | 2 +- bp_bin/rename_keys | 2 +- bp_bin/reverse_seq | 2 +- bp_bin/shuffle_seq | 2 +- bp_bin/soap_seq | 2 +- bp_bin/sort_records | 2 +- bp_bin/split_bed | 2 +- bp_bin/split_seq | 2 +- bp_bin/split_vals | 2 +- bp_bin/sum_vals | 2 +- bp_bin/tile_seq | 2 +- bp_bin/translate_seq | 2 +- bp_bin/transliterate_seq | 2 +- bp_bin/transliterate_vals | 2 +- bp_bin/uniq_vals | 2 +- bp_bin/upload_to_ucsc | 2 +- bp_bin/uppercase_seq | 2 +- bp_bin/vmatch_seq | 2 +- bp_bin/write_2bit | 2 +- bp_bin/write_align | 2 +- bp_bin/write_bed | 2 +- bp_bin/write_blast | 2 +- bp_bin/write_fasta | 2 +- bp_bin/write_fixedstep | 2 +- bp_bin/write_psl | 2 +- bp_bin/write_solid | 2 +- bp_bin/write_tab | 2 +- bp_bin/write_ucsc_config | 2 +- 102 files changed, 102 insertions(+), 102 deletions(-) diff --git a/bp_bin/add_ident b/bp_bin/add_ident index bbf6623..f9cdac0 100755 --- a/bp_bin/add_ident +++ b/bp_bin/add_ident @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/align_pair_seq b/bp_bin/align_pair_seq index ebe340d..bfa326b 100755 --- a/bp_bin/align_pair_seq +++ b/bp_bin/align_pair_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/align_seq b/bp_bin/align_seq index 469a97a..7f88042 100755 --- a/bp_bin/align_seq +++ b/bp_bin/align_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/analyze_bed b/bp_bin/analyze_bed index 544424f..16c53d5 100755 --- a/bp_bin/analyze_bed +++ b/bp_bin/analyze_bed @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/analyze_seq b/bp_bin/analyze_seq index 952fc4a..53a9d64 100755 --- a/bp_bin/analyze_seq +++ b/bp_bin/analyze_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/analyze_tags b/bp_bin/analyze_tags index cb24523..63a0d32 100755 --- a/bp_bin/analyze_tags +++ b/bp_bin/analyze_tags @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/analyze_vals b/bp_bin/analyze_vals index d246ac7..445b2db 100755 --- a/bp_bin/analyze_vals +++ b/bp_bin/analyze_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/assemble_tag_contigs b/bp_bin/assemble_tag_contigs index 06f4110..758a022 100755 --- a/bp_bin/assemble_tag_contigs +++ b/bp_bin/assemble_tag_contigs @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/bioscript b/bp_bin/bioscript index 6681da2..48dfec2 100755 --- a/bp_bin/bioscript +++ b/bp_bin/bioscript @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/biostat b/bp_bin/biostat index b751e95..744710a 100755 --- a/bp_bin/biostat +++ b/bp_bin/biostat @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/blast_seq b/bp_bin/blast_seq index de78c35..2f12545 100755 --- a/bp_bin/blast_seq +++ b/bp_bin/blast_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/blat_seq b/bp_bin/blat_seq index 4d49d5d..2fd60f6 100755 --- a/bp_bin/blat_seq +++ b/bp_bin/blat_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/calc_bit_scores b/bp_bin/calc_bit_scores index a634701..9de170d 100755 --- a/bp_bin/calc_bit_scores +++ b/bp_bin/calc_bit_scores @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/calc_fixedstep b/bp_bin/calc_fixedstep index 08f673e..27628fe 100755 --- a/bp_bin/calc_fixedstep +++ b/bp_bin/calc_fixedstep @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/complement_seq b/bp_bin/complement_seq index 6e7ba90..193d9e4 100755 --- a/bp_bin/complement_seq +++ b/bp_bin/complement_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/compute b/bp_bin/compute index 6fbcdbb..359becd 100755 --- a/bp_bin/compute +++ b/bp_bin/compute @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/count_records b/bp_bin/count_records index 6f97188..28b6157 100755 --- a/bp_bin/count_records +++ b/bp_bin/count_records @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/count_vals b/bp_bin/count_vals index fdd10a2..377af35 100755 --- a/bp_bin/count_vals +++ b/bp_bin/count_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/create_blast_db b/bp_bin/create_blast_db index 5882469..eee8357 100755 --- a/bp_bin/create_blast_db +++ b/bp_bin/create_blast_db @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/create_vmatch_index b/bp_bin/create_vmatch_index index 0dc28c0..aed4ca7 100755 --- a/bp_bin/create_vmatch_index +++ b/bp_bin/create_vmatch_index @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/create_weight_matrix b/bp_bin/create_weight_matrix index fa3cd77..8c5089b 100755 --- a/bp_bin/create_weight_matrix +++ b/bp_bin/create_weight_matrix @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/extract_seq b/bp_bin/extract_seq index 1588042..ee1a004 100755 --- a/bp_bin/extract_seq +++ b/bp_bin/extract_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/flip_tab b/bp_bin/flip_tab index c24cf0f..7f520bc 100755 --- a/bp_bin/flip_tab +++ b/bp_bin/flip_tab @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/fold_seq b/bp_bin/fold_seq index c8eba69..6563107 100755 --- a/bp_bin/fold_seq +++ b/bp_bin/fold_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/format_genome b/bp_bin/format_genome index f02720c..844e5af 100755 --- a/bp_bin/format_genome +++ b/bp_bin/format_genome @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/get_genome_align b/bp_bin/get_genome_align index 07876b5..664e6b5 100755 --- a/bp_bin/get_genome_align +++ b/bp_bin/get_genome_align @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/get_genome_phastcons b/bp_bin/get_genome_phastcons index 24994ab..0790bb0 100755 --- a/bp_bin/get_genome_phastcons +++ b/bp_bin/get_genome_phastcons @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/get_genome_seq b/bp_bin/get_genome_seq index c2874e3..5292b72 100755 --- a/bp_bin/get_genome_seq +++ b/bp_bin/get_genome_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/grab b/bp_bin/grab index 806ae1c..1be030a 100755 --- a/bp_bin/grab +++ b/bp_bin/grab @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/head_records b/bp_bin/head_records index d537501..9ae3918 100755 --- a/bp_bin/head_records +++ b/bp_bin/head_records @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/indel_seq b/bp_bin/indel_seq index 8dd606d..4fe3d3d 100755 --- a/bp_bin/indel_seq +++ b/bp_bin/indel_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/invert_align b/bp_bin/invert_align index 84f17d3..28ccac0 100755 --- a/bp_bin/invert_align +++ b/bp_bin/invert_align @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/length_seq b/bp_bin/length_seq index f7c3d95..4a94333 100755 --- a/bp_bin/length_seq +++ b/bp_bin/length_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/length_vals b/bp_bin/length_vals index 99a3c2b..b7ed3c4 100755 --- a/bp_bin/length_vals +++ b/bp_bin/length_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/list_biopieces b/bp_bin/list_biopieces index a51a2ad..bf17d01 100755 --- a/bp_bin/list_biopieces +++ b/bp_bin/list_biopieces @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/list_genomes b/bp_bin/list_genomes index 7a4f457..2c8fb1d 100755 --- a/bp_bin/list_genomes +++ b/bp_bin/list_genomes @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/match_seq b/bp_bin/match_seq index 0900097..dd1ac63 100755 --- a/bp_bin/match_seq +++ b/bp_bin/match_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/max_vals b/bp_bin/max_vals index 49e6fed..4d42fcf 100755 --- a/bp_bin/max_vals +++ b/bp_bin/max_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/mean_vals b/bp_bin/mean_vals index 654c4fe..45a1707 100755 --- a/bp_bin/mean_vals +++ b/bp_bin/mean_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/median_vals b/bp_bin/median_vals index c1b8013..9256cf5 100755 --- a/bp_bin/median_vals +++ b/bp_bin/median_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/merge_records b/bp_bin/merge_records index 7b33bc1..a452c7a 100755 --- a/bp_bin/merge_records +++ b/bp_bin/merge_records @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/merge_vals b/bp_bin/merge_vals index 9979d07..c6c6cfe 100755 --- a/bp_bin/merge_vals +++ b/bp_bin/merge_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/min_vals b/bp_bin/min_vals index 7eeb7a6..ed355d4 100755 --- a/bp_bin/min_vals +++ b/bp_bin/min_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/mutate_seq b/bp_bin/mutate_seq index 5d6d6db..2000e9d 100755 --- a/bp_bin/mutate_seq +++ b/bp_bin/mutate_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/oligo_freq b/bp_bin/oligo_freq index d660610..008bcbe 100755 --- a/bp_bin/oligo_freq +++ b/bp_bin/oligo_freq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/patscan_seq b/bp_bin/patscan_seq index 611481c..07dd685 100755 --- a/bp_bin/patscan_seq +++ b/bp_bin/patscan_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/plot_chrdist b/bp_bin/plot_chrdist index 16b86a6..172d3dc 100755 --- a/bp_bin/plot_chrdist +++ b/bp_bin/plot_chrdist @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/plot_histogram b/bp_bin/plot_histogram index 692af53..f04068f 100755 --- a/bp_bin/plot_histogram +++ b/bp_bin/plot_histogram @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/plot_karyogram b/bp_bin/plot_karyogram index e9542ca..a486190 100755 --- a/bp_bin/plot_karyogram +++ b/bp_bin/plot_karyogram @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/plot_lendist b/bp_bin/plot_lendist index a515f5c..0138c66 100755 --- a/bp_bin/plot_lendist +++ b/bp_bin/plot_lendist @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/plot_matches b/bp_bin/plot_matches index cc6a345..3aa016e 100755 --- a/bp_bin/plot_matches +++ b/bp_bin/plot_matches @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/plot_phastcons_profiles b/bp_bin/plot_phastcons_profiles index d50b0bb..89835c3 100755 --- a/bp_bin/plot_phastcons_profiles +++ b/bp_bin/plot_phastcons_profiles @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/plot_seqlogo b/bp_bin/plot_seqlogo index 34a533f..ce30a73 100755 --- a/bp_bin/plot_seqlogo +++ b/bp_bin/plot_seqlogo @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/print_wiki b/bp_bin/print_wiki index 1c36c10..1c581d2 100755 --- a/bp_bin/print_wiki +++ b/bp_bin/print_wiki @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/random_records b/bp_bin/random_records index af0b8fc..12986d1 100755 --- a/bp_bin/random_records +++ b/bp_bin/random_records @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_2bit b/bp_bin/read_2bit index ab2816a..fe5878e 100755 --- a/bp_bin/read_2bit +++ b/bp_bin/read_2bit @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_bed b/bp_bin/read_bed index 177d1c7..8d270cb 100755 --- a/bp_bin/read_bed +++ b/bp_bin/read_bed @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_blast_tab b/bp_bin/read_blast_tab index d5aaf8a..61aabc6 100755 --- a/bp_bin/read_blast_tab +++ b/bp_bin/read_blast_tab @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_embl b/bp_bin/read_embl index 7197794..50b24e5 100755 --- a/bp_bin/read_embl +++ b/bp_bin/read_embl @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_fasta b/bp_bin/read_fasta index 1c35069..488465d 100755 --- a/bp_bin/read_fasta +++ b/bp_bin/read_fasta @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_fixedstep b/bp_bin/read_fixedstep index 16ad12f..932ebe6 100755 --- a/bp_bin/read_fixedstep +++ b/bp_bin/read_fixedstep @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_gff b/bp_bin/read_gff index 3901757..d3785b6 100755 --- a/bp_bin/read_gff +++ b/bp_bin/read_gff @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_mysql b/bp_bin/read_mysql index f0ce4de..8abc908 100755 --- a/bp_bin/read_mysql +++ b/bp_bin/read_mysql @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_psl b/bp_bin/read_psl index ccf4f4a..bcba5ee 100755 --- a/bp_bin/read_psl +++ b/bp_bin/read_psl @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_soft b/bp_bin/read_soft index dfbf9f3..9e44f59 100755 --- a/bp_bin/read_soft +++ b/bp_bin/read_soft @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_solexa b/bp_bin/read_solexa index f509aa4..fb3a988 100755 --- a/bp_bin/read_solexa +++ b/bp_bin/read_solexa @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_solid b/bp_bin/read_solid index cfcd4e6..8a66618 100755 --- a/bp_bin/read_solid +++ b/bp_bin/read_solid @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_stockholm b/bp_bin/read_stockholm index 177ded5..400c8a7 100755 --- a/bp_bin/read_stockholm +++ b/bp_bin/read_stockholm @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_tab b/bp_bin/read_tab index e7a443b..cf37a12 100755 --- a/bp_bin/read_tab +++ b/bp_bin/read_tab @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/read_ucsc_config b/bp_bin/read_ucsc_config index a07a99f..fed3f83 100755 --- a/bp_bin/read_ucsc_config +++ b/bp_bin/read_ucsc_config @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/remove_adaptor b/bp_bin/remove_adaptor index a07a719..f037055 100755 --- a/bp_bin/remove_adaptor +++ b/bp_bin/remove_adaptor @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/remove_indels b/bp_bin/remove_indels index 5d350e0..59bbd4f 100755 --- a/bp_bin/remove_indels +++ b/bp_bin/remove_indels @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/remove_keys b/bp_bin/remove_keys index 03c6bcb..a61e763 100755 --- a/bp_bin/remove_keys +++ b/bp_bin/remove_keys @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/remove_mysql_tables b/bp_bin/remove_mysql_tables index 64450f4..b25b79d 100755 --- a/bp_bin/remove_mysql_tables +++ b/bp_bin/remove_mysql_tables @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/remove_ucsc_tracks b/bp_bin/remove_ucsc_tracks index e400502..52d7ee6 100755 --- a/bp_bin/remove_ucsc_tracks +++ b/bp_bin/remove_ucsc_tracks @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/rename_keys b/bp_bin/rename_keys index a792544..b8d85be 100755 --- a/bp_bin/rename_keys +++ b/bp_bin/rename_keys @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/reverse_seq b/bp_bin/reverse_seq index 1b331c9..7d13727 100755 --- a/bp_bin/reverse_seq +++ b/bp_bin/reverse_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/shuffle_seq b/bp_bin/shuffle_seq index e791397..11d4c91 100755 --- a/bp_bin/shuffle_seq +++ b/bp_bin/shuffle_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/soap_seq b/bp_bin/soap_seq index ffe9b57..67d53e9 100755 --- a/bp_bin/soap_seq +++ b/bp_bin/soap_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/sort_records b/bp_bin/sort_records index c9b3085..f6e4234 100755 --- a/bp_bin/sort_records +++ b/bp_bin/sort_records @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/split_bed b/bp_bin/split_bed index d344a3c..5fbdf40 100755 --- a/bp_bin/split_bed +++ b/bp_bin/split_bed @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/split_seq b/bp_bin/split_seq index 274e133..b8aa503 100755 --- a/bp_bin/split_seq +++ b/bp_bin/split_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/split_vals b/bp_bin/split_vals index 77194a3..f654523 100755 --- a/bp_bin/split_vals +++ b/bp_bin/split_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/sum_vals b/bp_bin/sum_vals index b0b150a..2db00ff 100755 --- a/bp_bin/sum_vals +++ b/bp_bin/sum_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/tile_seq b/bp_bin/tile_seq index 139a6f2..d0f9562 100755 --- a/bp_bin/tile_seq +++ b/bp_bin/tile_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/translate_seq b/bp_bin/translate_seq index 9627c9d..663012b 100755 --- a/bp_bin/translate_seq +++ b/bp_bin/translate_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/transliterate_seq b/bp_bin/transliterate_seq index 2908163..a53c62a 100755 --- a/bp_bin/transliterate_seq +++ b/bp_bin/transliterate_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/transliterate_vals b/bp_bin/transliterate_vals index 546652c..502939a 100755 --- a/bp_bin/transliterate_vals +++ b/bp_bin/transliterate_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/uniq_vals b/bp_bin/uniq_vals index f01be81..c9bf842 100755 --- a/bp_bin/uniq_vals +++ b/bp_bin/uniq_vals @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/upload_to_ucsc b/bp_bin/upload_to_ucsc index 69a4c3e..72ef8c4 100755 --- a/bp_bin/upload_to_ucsc +++ b/bp_bin/upload_to_ucsc @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/uppercase_seq b/bp_bin/uppercase_seq index 5e1ec7b..3b4b941 100755 --- a/bp_bin/uppercase_seq +++ b/bp_bin/uppercase_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/vmatch_seq b/bp_bin/vmatch_seq index 4d54dc9..9b8f952 100755 --- a/bp_bin/vmatch_seq +++ b/bp_bin/vmatch_seq @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_2bit b/bp_bin/write_2bit index bea78f3..1f1575e 100755 --- a/bp_bin/write_2bit +++ b/bp_bin/write_2bit @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_align b/bp_bin/write_align index 3963d94..4692f86 100755 --- a/bp_bin/write_align +++ b/bp_bin/write_align @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_bed b/bp_bin/write_bed index 34f8810..3b486fd 100755 --- a/bp_bin/write_bed +++ b/bp_bin/write_bed @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_blast b/bp_bin/write_blast index ecf0862..ba65a2b 100755 --- a/bp_bin/write_blast +++ b/bp_bin/write_blast @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_fasta b/bp_bin/write_fasta index a2f68c6..b6dd344 100755 --- a/bp_bin/write_fasta +++ b/bp_bin/write_fasta @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_fixedstep b/bp_bin/write_fixedstep index 7fbd8f9..97f8f21 100755 --- a/bp_bin/write_fixedstep +++ b/bp_bin/write_fixedstep @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_psl b/bp_bin/write_psl index 6956a23..6ff8fef 100755 --- a/bp_bin/write_psl +++ b/bp_bin/write_psl @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_solid b/bp_bin/write_solid index f999c8b..01b8220 100755 --- a/bp_bin/write_solid +++ b/bp_bin/write_solid @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_tab b/bp_bin/write_tab index eab15ff..2ed2ce8 100755 --- a/bp_bin/write_tab +++ b/bp_bin/write_tab @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. diff --git a/bp_bin/write_ucsc_config b/bp_bin/write_ucsc_config index c8d2df3..5d2e2d5 100755 --- a/bp_bin/write_ucsc_config +++ b/bp_bin/write_ucsc_config @@ -1,4 +1,4 @@ -#!/usr/bin/env perl -w +#!/usr/bin/env perl # Copyright (C) 2007-2009 Martin A. Hansen. -- 2.39.5