From 59a8d4cedcc4477492d40270f50e6ef34ded4741 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Tue, 9 Oct 2012 09:22:51 +0000 Subject: [PATCH] changed default values for findsim_seq git-svn-id: http://biopieces.googlecode.com/svn/trunk@1954 74ccb610-7750-0410-82ae-013aeee3265d --- bp_bin/findsim_seq | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bp_bin/findsim_seq b/bp_bin/findsim_seq index 0d0a58b..edfe980 100755 --- a/bp_bin/findsim_seq +++ b/bp_bin/findsim_seq @@ -38,8 +38,8 @@ casts << {:long=>'database', :short=>'d', :type=>'file!', :mandatory=>true, casts << {:long=>'kmer', :short=>'k', :type=>'uint', :mandatory=>false, :default=>8, :allowed=>"4,5,6,7,8,9", :disallowed=>nil} casts << {:long=>'step', :short=>'s', :type=>'uint', :mandatory=>false, :default=>1, :allowed=>nil, :disallowed=>"0"} casts << {:long=>'min_score', :short=>'m', :type=>'float', :mandatory=>false, :default=>0.5, :allowed=>nil, :disallowed=>nil} -casts << {:long=>'max_hits', :short=>'h', :type=>'uint', :mandatory=>false, :default=>7, :allowed=>nil, :disallowed=>"0"} -casts << {:long=>'max_diversity', :short=>'M', :type=>'float', :mandatory=>false, :default=>5, :allowed=>nil, :disallowed=>nil} +casts << {:long=>'max_hits', :short=>'h', :type=>'uint', :mandatory=>false, :default=>20, :allowed=>nil, :disallowed=>"0"} +casts << {:long=>'max_diversity', :short=>'M', :type=>'float', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} casts << {:long=>'query_ids', :short=>'Q', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} casts << {:long=>'subject_ids', :short=>'S', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} casts << {:long=>'realign', :short=>'r', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} -- 2.39.2