From 597561b655068868058010a3f363d325702b3e10 Mon Sep 17 00:00:00 2001
From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Sat, 4 Jun 2011 15:56:30 +0000
Subject: [PATCH] added tests for transliterate_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1455 74ccb610-7750-0410-82ae-013aeee3265d
---
 bp_test/in/transliterate_seq.in     |  4 ++++
 bp_test/out/transliterate_seq.out.1 |  4 ++++
 bp_test/out/transliterate_seq.out.2 |  4 ++++
 bp_test/test/test_transliterate_seq | 11 +++++++++++
 4 files changed, 23 insertions(+)
 create mode 100644 bp_test/in/transliterate_seq.in
 create mode 100644 bp_test/out/transliterate_seq.out.1
 create mode 100644 bp_test/out/transliterate_seq.out.2
 create mode 100755 bp_test/test/test_transliterate_seq

diff --git a/bp_test/in/transliterate_seq.in b/bp_test/in/transliterate_seq.in
new file mode 100644
index 0000000..268184b
--- /dev/null
+++ b/bp_test/in/transliterate_seq.in
@@ -0,0 +1,4 @@
+SEQ_NAME: test
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+---
diff --git a/bp_test/out/transliterate_seq.out.1 b/bp_test/out/transliterate_seq.out.1
new file mode 100644
index 0000000..33f001e
--- /dev/null
+++ b/bp_test/out/transliterate_seq.out.1
@@ -0,0 +1,4 @@
+SEQ: TACGATGCTAGCAATCYGACAACTGACTGACA
+SEQ_LEN: 32
+SEQ_NAME: test
+---
diff --git a/bp_test/out/transliterate_seq.out.2 b/bp_test/out/transliterate_seq.out.2
new file mode 100644
index 0000000..e1c975c
--- /dev/null
+++ b/bp_test/out/transliterate_seq.out.2
@@ -0,0 +1,4 @@
+SEQ: TACGATGCTAGCATCYGACACTGACTGAC
+SEQ_LEN: 29
+SEQ_NAME: test
+---
diff --git a/bp_test/test/test_transliterate_seq b/bp_test/test/test_transliterate_seq
new file mode 100755
index 0000000..cfefd1c
--- /dev/null
+++ b/bp_test/test/test_transliterate_seq
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -s 'N' -r 'A' -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -I $in -d 'N' -O $tmp"
+assert_no_diff $tmp $out.2
+clean
-- 
2.39.5