From 58f0569027c655981fc601b457b9915abd859011 Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko Date: Tue, 27 Apr 2010 12:14:30 -0400 Subject: [PATCH] Added links_names borrowed from NiPy"s gitwash --- sphinx/links_names.txt | 147 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 147 insertions(+) create mode 100644 sphinx/links_names.txt diff --git a/sphinx/links_names.txt b/sphinx/links_names.txt new file mode 100644 index 0000000..5cd5853 --- /dev/null +++ b/sphinx/links_names.txt @@ -0,0 +1,147 @@ +.. This (-*- rst -*-) format file contains commonly used link targets + and name substitutions. It may be included in many files, + therefore it should only contain link targets and name + substitutions. Try grepping for "^\.\. _" to find plausible + candidates for this list. + +.. NOTE: reST targets are + __not_case_sensitive__, so only one target definition is needed for + nipy, NIPY, Nipy, etc... + +.. _nipy: http://neuroimaging.scipy.org +.. _`Brain Imaging Center`: http://bic.berkeley.edu/ +.. _dipy: http://nipy.sourceforge.net/dipy +.. _`dipy github`: http://github.com/Garyfallidis/dipy +.. _nibabel: http://nipy.sourceforge.net/nibabel +.. _dipy: http://nipy.sourceforge.net/dipy + +.. Documentation tools +.. _graphviz: http://www.graphviz.org/ +.. _Sphinx: http://sphinx.pocoo.org/ +.. _`Sphinx reST`: http://sphinx.pocoo.org/rest.html +.. _reST: http://docutils.sourceforge.net/rst.html +.. _docutils: http://docutils.sourceforge.net + +.. Licenses +.. _GPL: http://www.gnu.org/licenses/gpl.html +.. _BSD: http://www.opensource.org/licenses/bsd-license.php +.. _LGPL: http://www.gnu.org/copyleft/lesser.html + +.. Source control +.. _git: http://git-scm.com/ +.. _github: http://github.com +.. _github help: http://help.github.com +.. _msysgit: http://code.google.com/p/msysgit/downloads/list +.. _git-osx-installer: http://code.google.com/p/git-osx-installer/downloads/list +.. _bazaar: http://bazaar-vcs.org/ + +.. Other working process +.. _pynifti: http://niftilib.sourceforge.net/pynifti/ +.. _nifticlibs: http://nifti.nimh.nih.gov +.. _nifti: http://nifti.nimh.nih.gov +.. _`nipy launchpad`: https://launchpad.net/nipy +.. _launchpad: https://launchpad.net/ +.. _`nipy trunk`: https://code.launchpad.net/~nipy-developers/nipy/trunk +.. _`nipy mailing list`: http://projects.scipy.org/mailman/listinfo/nipy-devel +.. _`nipy bugs`: https://bugs.launchpad.net/nipy +.. _pep8: http://www.python.org/dev/peps/pep-0008/ +.. _`numpy coding style`: http://scipy.org/scipy/numpy/wiki/CodingStyleGuidelines + +.. Code support stuff +.. _pychecker: http://pychecker.sourceforge.net/ +.. _pylint: http://www.logilab.org/project/pylint +.. _pyflakes: http://divmod.org/trac/wiki/DivmodPyflakes +.. _virtualenv: http://pypi.python.org/pypi/virtualenv +.. _flymake: http://flymake.sourceforge.net/ +.. _rope: http://rope.sourceforge.net/ +.. _pymacs: http://pymacs.progiciels-bpi.ca/pymacs.html +.. _ropemacs: http://rope.sourceforge.net/ropemacs.html +.. _ECB: http://ecb.sourceforge.net/ +.. _emacs_python_mode: http://www.emacswiki.org/cgi-bin/wiki/PythonMode +.. _doctest-mode: http://www.cis.upenn.edu/~edloper/projects/doctestmode/ +.. _nose: http://somethingaboutorange.com/mrl/projects/nose +.. _`python coverage tester`: http://nedbatchelder.com/code/modules/coverage.html + +.. Other python projects +.. _numpy: http://www.scipy.org/NumPy +.. _scipy: http://www.scipy.org +.. _ipython: http://ipython.scipy.org +.. _`ipython manual`: http://ipython.scipy.org/doc/manual/html +.. _matplotlib: http://matplotlib.sourceforge.net +.. _pythonxy: http://www.pythonxy.com +.. _ETS: http://code.enthought.com/projects/tool-suite.php +.. _`Enthought Tool Suite`: http://code.enthought.com/projects/tool-suite.php +.. _python: http://www.python.org +.. _mayavi: http://mayavi.sourceforge.net/ +.. _sympy: http://code.google.com/p/sympy/ + +.. Python imaging projects +.. _PyMVPA: http://www.pymvpa.org +.. _BrainVISA: http://brainvisa.info +.. _anatomist: http://brainvisa.info +.. _pydicom: http://code.google.com/p/pydicom/ + +.. Not so python imaging projects +.. _matlab: http://www.mathworks.com +.. _spm: http://www.fil.ion.ucl.ac.uk/spm +.. _spm8: http://www.fil.ion.ucl.ac.uk/spm/software/spm8 +.. _eeglab: http://sccn.ucsd.edu/eeglab +.. _AFNI: http://afni.nimh.nih.gov/afni +.. _FSL: http://www.fmrib.ox.ac.uk/fsl +.. _FreeSurfer: http://surfer.nmr.mgh.harvard.edu +.. _voxbo: http://www.voxbo.org +.. _mricron: http://www.cabiatl.com/mricro/mricron +.. _slicer: http://www.slicer.org/ + +.. File formats +.. _DICOM: http://medical.nema.org/ +.. _`wikipedia DICOM`: http://en.wikipedia.org/wiki/Digital_Imaging_and_Communications_in_Medicine +.. _GDCM: http://sourceforge.net/apps/mediawiki/gdcm +.. _`DICOM specs`: ftp://medical.nema.org/medical/dicom/2009/ +.. _`DICOM object definitions`: ftp://medical.nema.org/medical/dicom/2009/09_03pu3.pdf +.. _dcm2nii: http://www.cabiatl.com/mricro/mricron/dcm2nii.html +.. _`mricron install`: http://www.cabiatl.com/mricro/mricron/install.html +.. _dicom2nrrd: http://www.slicer.org/slicerWiki/index.php/Modules:DicomToNRRD-3.4 +.. _Nrrd: http://teem.sourceforge.net/nrrd/format.html + +.. General software +.. _gcc: http://gcc.gnu.org +.. _xcode: http://developer.apple.com/TOOLS/xcode +.. _mingw: http://www.mingw.org +.. _cygwin: http://cygwin.com +.. _macports: http://www.macports.org/ +.. _VTK: http://www.vtk.org/ +.. _ITK: http://www.itk.org/ +.. _swig: http://www.swig.org + +.. Functional imaging labs +.. _`functional imaging laboratory`: http://www.fil.ion.ucl.ac.uk +.. _FMRIB: http://www.fmrib.ox.ac.uk + +.. Other organizations +.. _enthought: +.. _kitware: http://www.kitware.com +.. _nitrc: http://www.nitrc.org + +.. General information links +.. _`wikipedia FMRI`: http://en.wikipedia.org/wiki/Functional_magnetic_resonance_imaging +.. _`wikipedia PET`: http://en.wikipedia.org/wiki/Positron_emission_tomography + +.. Mathematical methods +.. _`wikipedia ICA`: http://en.wikipedia.org/wiki/Independent_component_analysis +.. _`wikipedia PCA`: http://en.wikipedia.org/wiki/Principal_component_analysis + +.. Mathematical ideas +.. _`wikipedia spherical coordinate system`: http://en.wikipedia.org/wiki/Spherical_coordinate_system +.. _`mathworld spherical coordinate system`: http://mathworld.wolfram.com/SphericalCoordinates.html +.. _`wikipedia affine`: http://en.wikipedia.org/wiki/Affine_transformation +.. _`wikipedia linear transform`: http://en.wikipedia.org/wiki/Linear_transformation +.. _`wikipedia rotation matrix`: http://en.wikipedia.org/wiki/Rotation_matrix +.. _`wikipedia homogenous coordinates`: http://en.wikipedia.org/wiki/Homogeneous_coordinates +.. _`wikipedia axis angle`: http://en.wikipedia.org/wiki/Axis_angle +.. _`wikipedia Euler angles`: http://en.wikipedia.org/wiki/Euler_angles +.. _`Mathworld Euler angles`: http://mathworld.wolfram.com/EulerAngles.html +.. _`wikipedia quaternion`: http://en.wikipedia.org/wiki/Quaternion +.. _`wikipedia shear matrix`: http://en.wikipedia.org/wiki/Shear_matrix +.. _`wikipedia reflection`: http://en.wikipedia.org/wiki/Reflection_(mathematics) +.. _`wikipedia direction cosine`: http://en.wikipedia.org/wiki/Direction_cosine -- 2.39.2