From 40caf2e5fa5734370e66a057ef44391014354313 Mon Sep 17 00:00:00 2001
From: westcott <westcott>
Date: Mon, 23 Nov 2009 19:24:47 +0000
Subject: [PATCH] edited taxonomy equalizer to fix bug with windows

---
 taxonomyequalizer.cpp | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/taxonomyequalizer.cpp b/taxonomyequalizer.cpp
index e7fa07a..c84c439 100644
--- a/taxonomyequalizer.cpp
+++ b/taxonomyequalizer.cpp
@@ -27,16 +27,17 @@ TaxEqualizer::TaxEqualizer(string tfile, int c) : cutoff(c) {
 			mothurOutEndLine();
 		}
 		
-		inTax.close();  
-		openInputFile(tfile, inTax);
+		inTax.close(); 
+		ifstream in; 
+		openInputFile(tfile, in);
 		
 		ofstream out;
 		equalizedFile = getRootName(tfile) + "equalized.taxonomy";
 		openOutputFile(equalizedFile, out);
 		
 		string name, tax;
-		while (inTax) {
-			inTax >> name >> tax;   gobble(inTax);
+		while (in) {
+			in >> name >> tax;   gobble(in);
 			
 			if (containsConfidence) {  removeConfidences(tax);	}
 			
@@ -50,7 +51,7 @@ TaxEqualizer::TaxEqualizer(string tfile, int c) : cutoff(c) {
 			out << name << '\t' << tax << endl;
 		}
 		
-		inTax.close();
+		in.close();
 		out.close();
 					
 	}
-- 
2.39.5