From 3f84d8838cda81531b27543d674a5532cca450ff Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko Date: Fri, 28 Jan 2011 16:42:56 -0500 Subject: [PATCH] extending list of projects, groupping them into sections etc --- sphinx/proj_electrophys.rst | 3 +- sphinx/proj_neuralmodeling.rst | 34 +++++++++++++ sphinx/proj_psychophysics.rst | 17 +++++-- sphinx/projects.rst | 90 +++++++++++++++++++++++++++++++--- 4 files changed, 133 insertions(+), 11 deletions(-) create mode 100644 sphinx/proj_neuralmodeling.rst diff --git a/sphinx/proj_electrophys.rst b/sphinx/proj_electrophys.rst index 7f4b909..2069cd5 100644 --- a/sphinx/proj_electrophys.rst +++ b/sphinx/proj_electrophys.rst @@ -1,7 +1,7 @@ .. -*- mode: rst; fill-column: 78 -*- .. ex: set sts=4 ts=4 sw=4 et tw=79: -.. _project_electrophys: +.. _project_electrophysiology: ***************** Electrophysiology @@ -56,6 +56,7 @@ References * `Debian-Science Electrophysiology task page `_. * `Debian-Science Data acquisition task page `_. * `Debian-Science Brain-Computer Interface task page `_. +* _NeuralEnsemble .. include:: link_names.txt diff --git a/sphinx/proj_neuralmodeling.rst b/sphinx/proj_neuralmodeling.rst new file mode 100644 index 0000000..7730ae6 --- /dev/null +++ b/sphinx/proj_neuralmodeling.rst @@ -0,0 +1,34 @@ +.. -*- mode: rst; fill-column: 78 -*- +.. ex: set sts=4 ts=4 sw=4 et tw=79: + +.. _project_neuralmodeling: + +*************** +Neural Modeling +*************** + +We aim to cover tools for scientists interested in modeling of real neural +systems at different levels (from single neuron to complex networks). + + +Status +------ + +This effort initiated with packaging of :ref:`Brian ` +already available from NeuroDebian repository. + +.. todo:: Neural modeling software coverage + + * Complete packaging of :ref:`PyNN ` + * Complete packaging of :ref:`PCSIM ` + * Complete packaging of :ref:`NEURON ` + + +References +---------- + +* `Debian-Science Modeling of neural systems task page `_. +* NeuralEnsemble_ + + +.. include:: link_names.txt diff --git a/sphinx/proj_psychophysics.rst b/sphinx/proj_psychophysics.rst index 5b777ca..b830812 100644 --- a/sphinx/proj_psychophysics.rst +++ b/sphinx/proj_psychophysics.rst @@ -7,18 +7,29 @@ Psychopysics ************ - +Our goal is to equip Debian systems with FOSS solutions to carry out any +experiment relating physical stimuli and their psychological effects. Status ------ - +We have already made some popular tools, such as :ref:`PyEPL +` and :ref:`Psychopy `, a part of the official +Debian_ distribution and working on extending support of other tools and +libraries used in psychopysics research to interface with the stimuli delivery +and responses collection hardware. .. todo:: Tailor Debian for psychopysics research + * Complete packaging of :ref:`Psychtoolbox-3 ` + * Provide convenience package and guidelines for assuring robust + performance of the provided stimuli presentation software (e.g. setting + permissions for enabling RT scheduling, memory locking etc) + References ---------- - +* `Debian-Science Psychophysics task page `_. + .. include:: link_names.txt diff --git a/sphinx/projects.rst b/sphinx/projects.rst index ca1227f..64ede4c 100644 --- a/sphinx/projects.rst +++ b/sphinx/projects.rst @@ -13,21 +13,97 @@ particular project. If you want to contribute, take a look at them and email the neurodebian-devel_ mailing list with your intention to help. -Current projects ----------------- +Expanding coverage +------------------ -.. toctree:: - :maxdepth: 1 +* :ref:`project_matlab` +* Neuroimaging + + - :ref:`project_afni` + - :ref:`Packaging SPM8 ` + - :ref:`project_freesurfer` + +* :ref:`project_psychophysics` +* :ref:`project_electrophysiology` +* :ref:`Neural modeling ` + +Please refer to the `complete list of perspective packages +`_ which we are +working on (|ITP|\s) or just placed on the radars of Debian project (|RFP|\s). + + +Infrastructure +-------------- + +* :ref:`project_debtest` +* :ref:`project_snapshots` +* :ref:`coffeeart` + + +Cross-platform availability +--------------------------- + +* :ref:`chap_vm` +* Live CD (`preliminary version `_) +* Cloud computing + + +Expertise transfer +------------------ + +* `Best practices for deploying scientific software `_ +* Advise (e.g. on legal, deployment aspects) and contribute upstream projects +* Whenever necessary mentor and sponsor uploads of relevant projects into Debian_ + + +Promotion +--------- + +* `Publications `_ and + promotional materials + + - `Debian / NeuroDebian tri-fold + `_ + +* Conferences presence. To promote NeuroDebian project we consider + (conditioned on funding and agreements with organizers) to present + NeuroDebian at + + - HBM 2011 + - `Invite us `_ + +* `Inviting contributions and new members to join the NeuroDebian project + `_ - proj_afni - proj_debtest - proj_matlab .. Planned projects ---------------- +.. Finished projects ----------------- + .. toctree:: + :maxdepth: 1 + + vm + +.. toctree:: + :hidden: + :maxdepth: 1 + + proj_afni + proj_debtest + proj_electrophys + proj_psychophysics + proj_freesurfer + proj_matlab + proj_neuralmodeling + proj_snapshots + proj_template + livecd + coffeeart + + .. include:: link_names.txt -- 2.39.2