From 2d6aa2352c80bcc4eaeb881e2053417f2e7a1e29 Mon Sep 17 00:00:00 2001
From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 25 Aug 2009 10:53:29 +0000
Subject: [PATCH] fixed cpu switch in bowtie_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@644 74ccb610-7750-0410-82ae-013aeee3265d
---
 bp_bin/bowtie_seq | 1 +
 1 file changed, 1 insertion(+)

diff --git a/bp_bin/bowtie_seq b/bp_bin/bowtie_seq
index f6de2c5..cffcd32 100755
--- a/bp_bin/bowtie_seq
+++ b/bp_bin/bowtie_seq
@@ -94,6 +94,7 @@ close $fh_out;
 push @args, "-n $options->{ 'mismatches' }";
 push @args, "-v $options->{ 'mismatches' }";  # DANGER: using seed mismatches as alignment mismatches - may work, may not!
 push @args, "-f" if $type eq "FASTA";
+push @args, "-p $options->{ 'cpus' }";
 
 if ( defined $options->{ 'max_hits' } ) {
     push @args, "-k $options->{ 'max_hits' }";
-- 
2.39.2