From 2b596940dc1ae14b7d4fa14ffb1f97cadc8bf345 Mon Sep 17 00:00:00 2001
From: westcott <westcott>
Date: Wed, 4 May 2011 15:25:08 +0000
Subject: [PATCH] changes for chimera slayer

---
 blastdb.cpp       | 2 +-
 chimeraslayer.cpp | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/blastdb.cpp b/blastdb.cpp
index cc85989..40855d0 100644
--- a/blastdb.cpp
+++ b/blastdb.cpp
@@ -141,7 +141,7 @@ vector<int> BlastDB::findClosestMegaBlast(Sequence* seq, int n, int minPerID) {
 		
 		while(!m8FileHandle.eof()){
 			m8FileHandle >> dummy >> templateAccession >> searchScore >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score;
-			//cout << dummy << '\t' << templateAccession << '\t' << searchScore << '\t';
+			//cout << dummy << '\t' << templateAccession << '\t' << searchScore << '\t' << numBases << '\t' << mismatch << '\t' << gap << '\t' << startQuery << '\t' << endQuery << '\t' << startRef << '\t' << endRef << '\t' << eScore << '\t' << score << endl; 
 			
 			//get rest of junk in line
 			//while (!m8FileHandle.eof())	{	char c = m8FileHandle.get(); if (c == 10 || c == 13){	break;	}else{ cout << c; }	} //
diff --git a/chimeraslayer.cpp b/chimeraslayer.cpp
index cd268d3..5b10759 100644
--- a/chimeraslayer.cpp
+++ b/chimeraslayer.cpp
@@ -1030,7 +1030,7 @@ vector<Sequence*> ChimeraSlayer::getBlastSeqs(Sequence* q, vector<Sequence*>& db
 		
 		vector<int> tempIndexesLeft = databaseLeft->findClosestMegaBlast(queryLeft, num+1, minSim);
 		vector<int> tempIndexesRight = databaseLeft->findClosestMegaBlast(queryRight, num+1, minSim);
-		cout << q->getName() << '\t' << leftQuery << '\t' << "leftMatches = " << tempIndexesLeft.size() << '\t' << rightQuery	<< " rightMatches = " << tempIndexesRight.size() << endl;
+		//cout << q->getName() << '\t' << leftQuery << '\t' << "leftMatches = " << tempIndexesLeft.size() << '\t' << rightQuery	<< " rightMatches = " << tempIndexesRight.size() << endl;
 		vector<int> smaller;
 		vector<int> larger;
 		
-- 
2.39.5