From 136d269d3d005d03455e8095b04e490f9e51f71c Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 11 Feb 2009 10:59:10 +0000 Subject: [PATCH] fixed a bug in generating tag AM --- misc/maq2sam.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/misc/maq2sam.c b/misc/maq2sam.c index 70ecf41..6eaf2c6 100644 --- a/misc/maq2sam.c +++ b/misc/maq2sam.c @@ -148,7 +148,7 @@ void maq2tam_core(gzFile fp, const char *rg) printf("MF:i:%d\n", m1->flag); } else { printf("MF:i:%d\t", m1->flag); - if (m1->flag) printf("Aq:i:%d\t", m1->alt_qual); + if (m1->flag) printf("AM:i:%d\t", m1->alt_qual); printf("NM:i:%d\tUQ:i:%d\tH0:i:%d\tH1:i:%d\n", m1->info1&0xf, m1->info2, m1->c[0], m1->c[1]); } } -- 2.39.2