From 136d269d3d005d03455e8095b04e490f9e51f71c Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@live.co.uk>
Date: Wed, 11 Feb 2009 10:59:10 +0000
Subject: [PATCH] fixed a bug in generating tag AM
---
misc/maq2sam.c | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/misc/maq2sam.c b/misc/maq2sam.c
index 70ecf41..6eaf2c6 100644
--- a/misc/maq2sam.c
+++ b/misc/maq2sam.c
@@ -148,7 +148,7 @@ void maq2tam_core(gzFile fp, const char *rg)
printf("MF:i:%d\n", m1->flag);
} else {
printf("MF:i:%d\t", m1->flag);
- if (m1->flag) printf("Aq:i:%d\t", m1->alt_qual);
+ if (m1->flag) printf("AM:i:%d\t", m1->alt_qual);
printf("NM:i:%d\tUQ:i:%d\tH0:i:%d\tH1:i:%d\n", m1->info1&0xf, m1->info2, m1->c[0], m1->c[1]);
}
}
--
2.39.5