From 0ea682fed12952a1db4f2c7ed18dbbfcbb40612d Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko Date: Tue, 8 Feb 2011 12:39:44 -0500 Subject: [PATCH] VM: nd-vmsetupwizard - add option for sourcing of FSL/AFNI .sh files in user"s .profile --- tools/nd-vmsetupwizard | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/tools/nd-vmsetupwizard b/tools/nd-vmsetupwizard index abc5821..37cc549 100755 --- a/tools/nd-vmsetupwizard +++ b/tools/nd-vmsetupwizard @@ -88,6 +88,19 @@ EOT sudo bash -c "mkdir -p $cfg_dir && touch $success_flag" fi +if ! grep -q '/etc/fsl/fsl.sh' $HOME/.profile && \ + zenity --question $icon_opt --title="FSL/AFNI Environments" \ +--text="Packages, such as AFNI and FSL, provide large collections of command line tools which are available from their private directories, and require custom environment variables to be set for proper functioning. Usually you need to source /etc/fsl/fsl.sh or /etc/afni/afni.sh in your environments. + +Do you want to get those files, if available, sourced automatically for your environment? +"; then + for t in fsl afni; do + cf="/etc/$t/$t.sh" + grep -q -e "$cf" $HOME/.profile || \ + echo "[ -e \"$cf\" ] && . $cf" >> $HOME/.profile + done +fi + # create symlink to shared folder into homedir [ ! -e $HOME/host ] && ln -s /mnt/host $HOME/host -- 2.39.2