From 0523f3ace9618a39ddbabc4c5ae90a58427bacfc Mon Sep 17 00:00:00 2001 From: Michael Hanke Date: Sun, 23 Sep 2012 18:31:12 +0200 Subject: [PATCH] First complete draft of the new frontpage. --- sphinx/_static/neurodebian.css | 20 ++- sphinx/dump.rst | 118 +++++++++++++++ sphinx/index.rst | 263 ++++++--------------------------- sphinx/publications.rst | 105 +++++++++++++ 4 files changed, 289 insertions(+), 217 deletions(-) create mode 100644 sphinx/dump.rst create mode 100644 sphinx/publications.rst diff --git a/sphinx/_static/neurodebian.css b/sphinx/_static/neurodebian.css index a73ddfd..de11813 100644 --- a/sphinx/_static/neurodebian.css +++ b/sphinx/_static/neurodebian.css @@ -829,7 +829,7 @@ div#randomquote { } div#randomquote blockquote.epigraph { - padding: 0 2em 0 2em; + padding: 0 2em 2em 2em; background-color: transparent; font-style: italic; font-size: 80%; @@ -844,3 +844,21 @@ div#frequently-asked-questions dt { dt:after { content: "\203A\203A"; padding-left: .25em;} +div#sitemap ul { + float: left; + list-style: none; +} + +.linkmore { + margin-top: -2em; + float: right; + font-size: 70%; +} + +.linkmore:before { + content: "[" +} + +.linkmore:after { + content: "]" +} diff --git a/sphinx/dump.rst b/sphinx/dump.rst new file mode 100644 index 0000000..d7f76ba --- /dev/null +++ b/sphinx/dump.rst @@ -0,0 +1,118 @@ +.. _support: + +Contacts +======== + +`Email us directly `_ with any "private" +communication. Otherwise please use our public mailing lists, which +exist not only to provide user-support but also to establish +communication channels within the NeuroDebian community + +.. _chap_mailinglists: + +* neurodebian-users_: Discussions and support of NeuroDebian users + +* neurodebian-upstream_: General discussions and knowledge sharing + among developers of neuroscience software. We also use it + to update you with summaries of recent relevant developments in + Debian project + +* neurodebian-devel_: Technical mailing list for discussions on + NeuroDebian development + +You are welcome also to join #neurodebian IRC room on OFTC network if +you have quick questions or want to join a live discussion. + +.. _chap_team: + +The team +======== + +`Michael Hanke `_ and `Yaroslav Halchenko +`_ originally started NeuroDebian (formerly the +`Experimental Psychology Debian packaging project +`_) and are the current project +leaders. However, the whole project would not be possible without the work of +over 3,000 Debian_ developers and contributors who are as enthusiastically +building the Debian operating system. +A number of packages that are available from the NeuroDebian repository have +been contributed by various individuals and other teams in Debian, such as +`Debian Med`_ and `Debian Science`_. We want to express our gratitude to all +maintainers_ that help to make Debian_ the ultimate software platform for +neuroscience. + +.. _maintainers: pkgs.html#by-maintainer + + +Acknowledgements +================ + +We are grateful to `Jim Haxby`_ for his continued support and :ref:`endless supply of +Italian espresso `. + +.. _Jim Haxby: http://haxbylab.dartmouth.edu/ppl/jim.html + +Thanks to the following institutions and individuals for hosting a mirror: + +* `Department of Psychological and Brain Sciences at Dartmouth College`_ + *[us-nh]* (primary mirror) +* `Department of Experimental Psychology at the University of Magdeburg`_ + *[de-md]* +* `Neurobot at Aristotle University of Thessaloniki, Greece`_ *[gr]* +* `Paul Ivanov`_ *[us-ca]* +* `Medical-image Analysis and Statistical Interpretation lab at Vanderbilt`_ + *[us-tn]* +* `Australia's research and education network (AARNET) + `_ *[au]* +* Kiyotaka Nemoto (AKA Mr. Lin4Neuro_) *[jp]* +* Iaroslav Iurchenko *[ua]* +* `Nikolaus Valentin Haenel`_ *[de-v]* + +If your are interested in mirroring the repository, please see the :ref:`faq`. + +.. _Department of Psychological and Brain Sciences at Dartmouth College: http://www.dartmouth.edu/~psych +.. _Department of Experimental Psychology at the University of Magdeburg: http://apsy.gse.uni-magdeburg.de +.. _Neurobot at Aristotle University of Thessaloniki, Greece: http://neurobot.bio.auth.gr +.. _Paul Ivanov: http://www.pirsquared.org +.. _Medical-image Analysis and Statistical Interpretation lab at Vanderbilt: https://masi.vuse.vanderbilt.edu +.. _Nikolaus Valentin Haenel: http://haenel.co + +.. _chap_popularity: + +Popularity +========== + +.. raw:: html + +

+ +Popularity Contest +------------------ + +We encourage you to participate in the `popularity +contest `_ (popcon), which anonymously +collects the list of packages you installed/use on your system. +Collecting such statistics is of particular importance for research +software projects as a prove of an existing user-base. If upon +installation of the system you rejected the invitation to participate +you can always change your decision by running:: + + sudo dpkg-reconfigure popularity-contest + +.. note:: + + If you are deploying multiple systems through cloning, to not have + all systems considered as one, it would be necessary to re-generate + the random MY_HOSTID. Following commands ran as root should do it + (as root) without any interactive dialog:: + + sed -i -e 's,PARTICIPATE *= *.no.,PARTICIPATE="yes",g' -e '/^ *MY_HOSTID/d' /etc/popularity-contest.conf + DEBIAN_FRONTEND=noninteractive dpkg-reconfigure popularity-contest + +In addition to popcon pages for your "core" distribution (e.g. `Debian +`__ or `Ubuntu +`__) you can see/get statistics for +submissions to `NeuroDebian `__ and +know that you are already contributing back to the community. + + diff --git a/sphinx/index.rst b/sphinx/index.rst index d8a3c17..c172189 100644 --- a/sphinx/index.rst +++ b/sphinx/index.rst @@ -21,6 +21,8 @@ Learn more about NeuroDebian, the goals of this project, and help us |spread|! .. raw:: html +
more publications
+
@@ -31,6 +33,7 @@ Learn more about NeuroDebian, the goals of this project, and help us |spread|! .. raw:: html
+
more testimonials
.. _Ubuntu: http://www.ubuntu.com @@ -40,7 +43,8 @@ Learn more about NeuroDebian, the goals of this project, and help us |spread|! Get NeuroDebian =============== -Make your selection to enable NeuroDebian on your computer: +Choose on which operating system you want to run NeuroDebian, and select a +download server close to you: .. include:: sources_lists @@ -136,228 +140,53 @@ News rate: 300000}); -For more news and information see our :ref:`blog `. Older news items are -available on identi.ca_. Follow us on identi.ca_ (preferred) or twitter_ to -subscribe to the NeuroDebian news. - .. _identi.ca: http://identi.ca/neurodebian .. _twitter: http://twitter.com/NeuroDebian - - -.. _support: - -Contacts -======== - -`Email us directly `_ with any "private" -communication. Otherwise please use our public mailing lists, which -exist not only to provide user-support but also to establish -communication channels within the NeuroDebian community - -* neurodebian-users_: Discussions and support of NeuroDebian users - -* neurodebian-upstream_: General discussions and knowledge sharing - among developers of neuroscience software. We also use it - to update you with summaries of recent relevant developments in - Debian project - -* neurodebian-devel_: Technical mailing list for discussions on - NeuroDebian development - -You are welcome also to join #neurodebian IRC room on OFTC network if -you have quick questions or want to join a live discussion. - -.. _chap_team: - -The team -======== - -`Michael Hanke `_ and `Yaroslav Halchenko -`_ originally started NeuroDebian (formerly the -`Experimental Psychology Debian packaging project -`_) and are the current project -leaders. However, the whole project would not be possible without the work of -over 3,000 Debian_ developers and contributors who are as enthusiastically -building the Debian operating system. -A number of packages that are available from the NeuroDebian repository have -been contributed by various individuals and other teams in Debian, such as -`Debian Med`_ and `Debian Science`_. We want to express our gratitude to all -maintainers_ that help to make Debian_ the ultimate software platform for -neuroscience. - -.. _maintainers: pkgs.html#by-maintainer - - -Acknowledgements -================ - -We are grateful to `Jim Haxby`_ for his continued support and :ref:`endless supply of -Italian espresso `. - -.. _Jim Haxby: http://haxbylab.dartmouth.edu/ppl/jim.html - -Thanks to the following institutions and individuals for hosting a mirror: - -* `Department of Psychological and Brain Sciences at Dartmouth College`_ - *[us-nh]* (primary mirror) -* `Department of Experimental Psychology at the University of Magdeburg`_ - *[de-md]* -* `Neurobot at Aristotle University of Thessaloniki, Greece`_ *[gr]* -* `Paul Ivanov`_ *[us-ca]* -* `Medical-image Analysis and Statistical Interpretation lab at Vanderbilt`_ - *[us-tn]* -* `Australia's research and education network (AARNET) - `_ *[au]* -* Kiyotaka Nemoto (AKA Mr. Lin4Neuro_) *[jp]* -* Iaroslav Iurchenko *[ua]* -* `Nikolaus Valentin Haenel`_ *[de-v]* - -If your are interested in mirroring the repository, please see the :ref:`faq`. - -.. _Department of Psychological and Brain Sciences at Dartmouth College: http://www.dartmouth.edu/~psych -.. _Department of Experimental Psychology at the University of Magdeburg: http://apsy.gse.uni-magdeburg.de -.. _Neurobot at Aristotle University of Thessaloniki, Greece: http://neurobot.bio.auth.gr -.. _Paul Ivanov: http://www.pirsquared.org -.. _Medical-image Analysis and Statistical Interpretation lab at Vanderbilt: https://masi.vuse.vanderbilt.edu -.. _Nikolaus Valentin Haenel: http://haenel.co - - -Publications -============ - -Hanke, M. (2012). `Share your tools! But fear the wombat! Seriously. -`_ *Talk -given at* `Brainhack `_ 2012 at the -Max-Planck-Institute for Human Cognitive and Brain Sciences*, Leipzig, Germany. -[`video `_] - -Hanke, M. (2012). `Computational and cognitive neuroscience boosted by Debian -OR Just using Debian is not enough -`_. -Talk given at the workshop "Debian for Scientific Facilities Days" at the -European Synchrotron Radiation Facility (ESRF), Grenoble, France. - -Halchenko, Y. O. & Hanke, M. (2012). `Open is not enough. Let’s take the -next step: An integrated, community-driven computing platform for neuroscience -`_. *Frontiers in Neuroinformatics*, -6:22. - .. raw:: html - -
- -Hanke, M. (2012). `The why and how of getting packaged -<_files/Hanke_GetPackaged_CodeJam5_2012.pdf>`_. -*Talk given at BrainScaleS CodeJam 5, Convergence in Computational Neuroscience*, -University of Edinburgh, Edinburgh, UK. - -Halchenko, Y. O. & Hanke, M. (2012). `Environments for efficient -contemporary research in neuroimaging: PyMVPA and NeuroDebian -<_files/HalchenkoHanke_ContemporaryNeuroimaging_PENN2012.pdf>`_. -*Talk given at the University of Pennsylvania School of Medicine*, -Philadelphia, PA, USA. - -Hanke, M. (2012). `Rock solid, brand new, everyday, for free, not a joke: -NeuroDebian <_files/Hanke_NeuroDebian_MPI2012.pdf>`_. -*Talk given at the Max-Planck-Institute for Human Cognitive and Brain -Sciences*, Leipzig, Germany. - -Hanke, M. (2011). `More than batteries included: NeuroDebian -<_files/Hanke_NeuroDebian_EuroSciPy2011.pdf>`_. -*Talk given at the Python in Neuroscience satellite of EuroScipy 2011*, -Paris, France. - -Halchenko, Y. O. (2011). `π's in Debian or Scientific Debian: NumPy, SciPy and beyond -<_files/Halchenko_EuroScipy11_3_14s_in_Debian.pdf>`_. -*Talk given at* `EuroScipy 2011 `_, -Paris, France. - -Hanke, M. & Halchenko, Y. O. (2011). `Neuroscience runs on GNU/Linux -`_. -*Frontiers in Neuroinformatics, 5:8*. - -Hanke, M., Halchenko, Y. O. & Haxby, J. V. (2011). `NeuroDebian -- versatile -platform for brain-imaging research <_files/NeuroDebian_HBM2011.png>`_ -*Poster presented at the annual meeting of the Organisation for Human Brain -Mapping*, Quebec City, Canada. - -Hanke, M. (2011). `Integrating Condor into the Debian operating system -<_files/Hanke_CondorDebianIntegration_CondorWeek2011.pdf>`_. -*Talk given at* `CondorWeek 2011 -`_, -Madison, Wisconsin, USA. - -Hanke, M. & Halchenko, Y. O. (2010). :ref:`Report from the Debian booth at -SfN2010 `. *Annual meeting of the Society for -Neuroscience*, San Diego, USA. - -Halchenko, Y. O., Hanke, M., Haxby, J. V., Pollmann, S. & Raizada, R. D. -(2010). `Having trouble getting your Nature paper? Maybe you are not using the -right tools? <_files/NeuroDebian_SfN2010.png>`_ *Poster presented at the -annual meeting of the Society for Neuroscience*, San Diego, USA. - -Hanke, M., Halchenko, Y. O. (2010). `Debian: The ultimate platform for -neuroimaging research <_files/HankeHalchenko_NeuroDebianDebConf10.pdf>`_. -*Talk given at* DebConf10_, New York City, USA. [video: -`low resolution `_, -`high resolution `_] - -Hanke, M., Halchenko, Y. O., Haxby, J. V. & Pollmann, S. (2010). `Improving -efficiency in cognitive neuroscience research with NeuroDebian -<_files/NeuroDebian_CNS2010.pdf>`_. *Poster presented at the annual -meeting of the Cognitive Neuroscience Society*, Montréal, Canada. - -Halchenko, Y. O., Hanke, M. (2009). `An ecosystem of neuroimaging, -statistical learning, and open-source software to make research more -efficient, more open, and more fun -<_files/HalchenkoHanke_FossEcosystemDC09.pdf>`_. *Talk given at* -`Dartmouth College`_, New Hampshire, USA. - -.. raw:: html - -
- -.. _DebConf10: http://debconf10.debconf.org/ -.. _Dartmouth College: http://www.dartmouth.edu/ - -Popularity -========== +
+
+ +* **About** +* :ref:`Team ` +* :ref:`chap_popularity` +* :ref:`FAQ ` +* :ref:`Blog ` +* :ref:`chap_publications` +* :ref:`testimonials` +* :ref:`coffeeart` + +.. start a new list + +* **Services** +* :ref:`Software ` +* :ref:`Data ` +* :ref:`Appliance ` + +.. start a new list + +* **Community** +* :ref:`Mailing lists ` +* `OpenHatch `_ +* `Identi.ca `_ +* `Twitter `_ +* `Google+ `_ +* `YouTube `_ +* `GitHub `_ + +.. start a new list + +* **Related** +* `Debian `_ +* `Debian Med `_ +* `NITRC `_ .. raw:: html -

- -Popularity Contest ------------------- - -We encourage you to participate in the `popularity -contest `_ (popcon), which anonymously -collects the list of packages you installed/use on your system. -Collecting such statistics is of particular importance for research -software projects as a prove of an existing user-base. If upon -installation of the system you rejected the invitation to participate -you can always change your decision by running:: - - sudo dpkg-reconfigure popularity-contest - -.. note:: - - If you are deploying multiple systems through cloning, to not have - all systems considered as one, it would be necessary to re-generate - the random MY_HOSTID. Following commands ran as root should do it - (as root) without any interactive dialog:: - - sed -i -e 's,PARTICIPATE *= *.no.,PARTICIPATE="yes",g' -e '/^ *MY_HOSTID/d' /etc/popularity-contest.conf - DEBIAN_FRONTEND=noninteractive dpkg-reconfigure popularity-contest - -In addition to popcon pages for your "core" distribution (e.g. `Debian -`__ or `Ubuntu -`__) you can see/get statistics for -submissions to `NeuroDebian `__ and -know that you are already contributing back to the community. +
+
.. toctree:: @@ -368,6 +197,7 @@ know that you are already contributing back to the community. pkgs spread vm + publications coffeeart photoalbum projects @@ -385,6 +215,7 @@ know that you are already contributing back to the community. quotes-nitrc sources_lists vm_welcome + dump .. include:: link_names.txt .. include:: substitutions.txt @@ -393,13 +224,13 @@ know that you are already contributing back to the community.