From 01cf17366cc275b6e388af00f1a981902345122f Mon Sep 17 00:00:00 2001 From: martinahansen Date: Mon, 30 May 2011 11:14:40 +0000 Subject: [PATCH] rename switch to something more appropriate git-svn-id: http://biopieces.googlecode.com/svn/trunk@1447 74ccb610-7750-0410-82ae-013aeee3265d --- bp_bin/assemble_seq_idba | 2 +- bp_bin/assemble_seq_velvet | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/bp_bin/assemble_seq_idba b/bp_bin/assemble_seq_idba index e6a1290..1f392e9 100755 --- a/bp_bin/assemble_seq_idba +++ b/bp_bin/assemble_seq_idba @@ -40,7 +40,7 @@ casts << {:long=>'count_min', :short=>'c', :type=>'uint', :mandatory=>false, :d casts << {:long=>'cover', :short=>'C', :type=>'uint', :mandatory=>false, :default=>0, :allowed=>nil, :disallowed=>nil} casts << {:long=>'pairs_min', :short=>'p', :type=>'uint', :mandatory=>false, :default=>5, :allowed=>nil, :disallowed=>nil} casts << {:long=>'prefix_len', :short=>'P', :type=>'uint', :mandatory=>false, :default=>3, :allowed=>nil, :disallowed=>nil} -casts << {:long=>'clean', :short=>'x', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} +casts << {:long=>'clean', :short=>'X', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} options = Biopieces.options_parse(ARGV, casts) diff --git a/bp_bin/assemble_seq_velvet b/bp_bin/assemble_seq_velvet index 7569811..71fc5c1 100755 --- a/bp_bin/assemble_seq_velvet +++ b/bp_bin/assemble_seq_velvet @@ -148,7 +148,7 @@ casts << {:long=>'kmer_min', :short=>'k', :type=>'uint', :mandatory=>true, casts << {:long=>'kmer_max', :short=>'K', :type=>'uint', :mandatory=>true, :default=>31, :allowed=>nil, :disallowed=>nil} casts << {:long=>'cov_cutoff', :short=>'c', :type=>'list', :mandatory=>true, :default=>cov_cutoffs, :allowed=>nil, :disallowed=>nil} casts << {:long=>'exp_cov', :short=>'e', :type=>'float', :mandatory=>true, :default=>'auto', :allowed=>nil, :disallowed=>nil} -casts << {:long=>'clean', :short=>'x', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} +casts << {:long=>'clean', :short=>'X', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil} options = Biopieces.options_parse(ARGV, casts) -- 2.39.2