From 3dba4eab583a0ac8e3638cac5970641c79e661f9 Mon Sep 17 00:00:00 2001
From: Pat Schloss <pschloss@umich.edu>
Date: Wed, 4 Apr 2012 15:22:31 -0400
Subject: [PATCH] Pat's fix

---
 trimflowscommand.h | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/trimflowscommand.h b/trimflowscommand.h
index 0dc1cd9..8656fd0 100644
--- a/trimflowscommand.h
+++ b/trimflowscommand.h
@@ -58,7 +58,9 @@ private:
 	bool allFiles;
 	int processors;
 	int numFPrimers, numRPrimers;
-	int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs;
+    int numLinkers, numSpacers;
+
+    int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs;
 	int numFlows;
 	float signal, noise;
 	bool fasta;
@@ -66,7 +68,6 @@ private:
 	
 	string flowFileName, oligoFileName, outputDir;
 
-
 	map<string, int> barcodes;
 	map<string, int> primers;
 	vector<string> revPrimer;
-- 
2.39.2