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Heng Li [Wed, 18 Feb 2009 22:23:27 +0000 (22:23 +0000)]
* samtools-0.1.2-9
* fixed a bug in bam_fetch, caused by completely contained adjacent chunks
On behalf of Bob Handsaker [Wed, 18 Feb 2009 19:06:57 +0000 (19:06 +0000)]
Fix annoying segv when invalid region specified.
Heng Li [Tue, 17 Feb 2009 10:49:55 +0000 (10:49 +0000)]
* move indel_filter.pl to samtools.pl
Heng Li [Sat, 14 Feb 2009 21:22:30 +0000 (21:22 +0000)]
* samtools-0.1.2-7
* fixed a bug in fixmate: SE reads are flagged as BAM_FMUNMAP
Heng Li [Fri, 13 Feb 2009 09:54:45 +0000 (09:54 +0000)]
* samtools-0.1.2-7
* fixed a minor bug in flagstat
Heng Li [Thu, 12 Feb 2009 11:15:32 +0000 (11:15 +0000)]
* samtools-0.1.2-6
* improve indel caller by setting maximum window size
Heng Li [Thu, 12 Feb 2009 10:30:29 +0000 (10:30 +0000)]
* output max mapping quality in indel line
Heng Li [Wed, 11 Feb 2009 10:59:10 +0000 (10:59 +0000)]
fixed a bug in generating tag AM
Heng Li [Tue, 3 Feb 2009 10:43:11 +0000 (10:43 +0000)]
fixed a potential memory problem in indexing
On behalf of Bob Handsaker [Mon, 2 Feb 2009 15:52:52 +0000 (15:52 +0000)]
Pass LIBS to recursive targets to facilitate building at Broad.
Heng Li [Mon, 2 Feb 2009 10:12:15 +0000 (10:12 +0000)]
* samtools-0.1.2-3
* fixed a bug in generating GLFv2 for indels
* improve flagstat report a little bit
Heng Li [Thu, 29 Jan 2009 12:33:23 +0000 (12:33 +0000)]
* samtools-0.1.2-1
* added flagstat command
Heng Li [Wed, 28 Jan 2009 13:31:12 +0000 (13:31 +0000)]
Release SAMtools-0.1.2
Heng Li [Wed, 28 Jan 2009 12:54:08 +0000 (12:54 +0000)]
Script for filtering indel results
Heng Li [Sun, 25 Jan 2009 11:45:37 +0000 (11:45 +0000)]
convert ZOOM to SAM
Heng Li [Sat, 24 Jan 2009 14:25:07 +0000 (14:25 +0000)]
add a script to convert novo alignment to SAM
Heng Li [Fri, 23 Jan 2009 20:57:39 +0000 (20:57 +0000)]
update documentation and ChangeLog
Heng Li [Fri, 23 Jan 2009 19:22:59 +0000 (19:22 +0000)]
* samtools-0.1.1-19
* fixed a bug in "merge" command line
Heng Li [Thu, 22 Jan 2009 15:36:48 +0000 (15:36 +0000)]
* merge from branches/dev/
* all future development will happen here
Heng Li [Thu, 22 Jan 2009 15:14:27 +0000 (15:14 +0000)]
* Merge from branches/dev/
* all future development will happen here at trunk/
On behalf of Bob Handsaker [Wed, 7 Jan 2009 21:42:15 +0000 (21:42 +0000)]
Fix problem with compiling without curses.
Heng Li [Mon, 22 Dec 2008 15:58:02 +0000 (15:58 +0000)]
Create trunk copy