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barnett [Wed, 15 Jul 2009 18:06:13 +0000 (18:06 +0000)]

Updated README

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barnett [Wed, 15 Jul 2009 18:02:28 +0000 (18:02 +0000)]

Full update to SVN after combining BamReader and BamWriter into cohesive BamTools API.

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barnett [Mon, 18 May 2009 16:25:20 +0000 (16:25 +0000)]

Major overhaul of BamReader. No longer relying on bgzf.* API. Sped up random-access. STLUtilities.h no longer needed

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barnett [Thu, 23 Apr 2009 20:33:56 +0000 (20:33 +0000)]

Had signs reversed in GetOffset error check. Fixed

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barnett [Thu, 23 Apr 2009 20:26:30 +0000 (20:26 +0000)]

Removed assertion in GetOffset(), now returns -1 if regionChunks == 0. Jump() then returns false if offset = -1, else tries to Jump

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barnett [Sun, 19 Apr 2009 20:39:29 +0000 (20:39 +0000)]

Bug fix in BamMerge.cpp by Chip

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barnett [Mon, 13 Apr 2009 15:17:17 +0000 (15:17 +0000)]

Chip - removed limits

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barnett [Mon, 13 Apr 2009 13:45:48 +0000 (13:45 +0000)]

Added Chip's BamMerge to the repository

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mikaels [Sat, 11 Apr 2009 03:45:55 +0000 (03:45 +0000)]

Fixed some of the output for tag data.

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mikaels [Sat, 11 Apr 2009 03:45:39 +0000 (03:45 +0000)]

Forgot some include statements.

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mikaels [Sat, 11 Apr 2009 03:32:53 +0000 (03:32 +0000)]

Added tag data support.

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mikaels [Sat, 11 Apr 2009 03:31:59 +0000 (03:31 +0000)]

Added support for the tag data and provided a GetReadGroup accessor.

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mikaels [Sat, 11 Apr 2009 01:25:31 +0000 (01:25 +0000)]

removed DOS line endings

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mikaels [Fri, 10 Apr 2009 18:03:14 +0000 (18:03 +0000)]

Removed the profiling options since they shouldn't be standard.

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mikaels [Fri, 10 Apr 2009 18:00:26 +0000 (18:00 +0000)]

Made many improvements to the code that pass the stricter syntax checking in Visual Studio.

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mikaels [Fri, 10 Apr 2009 17:59:34 +0000 (17:59 +0000)]

Updated the header text to give credit to the Broad Institute for the bgzf routines.

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mikaels [Fri, 10 Apr 2009 17:59:00 +0000 (17:59 +0000)]

Defined some of the non-standard data types for compatibility with Visual Studio.

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mikaels [Fri, 10 Apr 2009 16:06:39 +0000 (16:06 +0000)]

Added BamConversion to the make clean command

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barnett [Fri, 10 Apr 2009 15:26:37 +0000 (15:26 +0000)]

Updated BamReaderMain.cpp to remove unused variable warnings from compile.

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mikaels [Fri, 10 Apr 2009 15:07:49 +0000 (15:07 +0000)]

Initial import.

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barnett [Fri, 10 Apr 2009 15:06:28 +0000 (15:06 +0000)]

creating directories

git-svn-id: svn+ssh://gene.bc.edu/home/subversion/Derek/BamTools/trunk@1 9efb377e-2e27-44b9-b91a-ec4abb80ed8b

Branch of bamtools which has rudimentary Debian packaging

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