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upgraded add_ident tests
[biopieces.git] / code_ruby /
2011-05-11 martinahansen1 vector only patternmatcher.rb now :o) tree | commitdiff
2011-05-10 martinahansenadded procedure switch to find_genes tree | commitdiff
2011-05-09 martinahansenadded coverage method to prodigal.rb tree | commitdiff
2011-05-09 martinahansenadded prodigal.rb tree | commitdiff
2011-05-09 martinahansenupdated genbank.rb to allow empty defaults tree | commitdiff
2011-05-04 martinahansenfixed default cast for lists in biopieces.rb tree | commitdiff
2011-05-02 martinahansencode update tree | commitdiff
2011-04-19 martinahansenfixed bit fields in pattern matcher tree | commitdiff
2011-04-18 martinahansenadded find_adaptor biopiece tree | commitdiff
2011-04-16 martinahansencleaned patternmatcher code tree | commitdiff
2011-04-15 martinahansenpattern hell tree | commitdiff
2011-04-14 martinahansenupdated patternmatcher code tree | commitdiff
2011-03-30 martinahansenreverted patternmatcher to original tree | commitdiff
2011-03-30 martinahansenupdated find_mids tree | commitdiff
2011-03-29 martinahansenseq.rb update tree | commitdiff
2011-03-29 martinahansenadded final unit test to test_patternmatcher.rb tree | commitdiff
2011-03-29 martinahansenfixed Rakefile tree | commitdiff
2011-03-29 martinahansenremoved amatch dependency in ruby code tree | commitdiff
2011-03-28 martinahansenfixed patternmatcher.rb tree | commitdiff
2011-03-28 martinahansenadded PatternMatcher to ruby code tree | commitdiff
2011-03-20 martinahansenplain and hd match in ruby Seq.rb now works tree | commitdiff
2011-03-19 martinahansenworked on match code in Seq.rb tree | commitdiff
2011-03-19 martinahansenadded rdoc stuff tree | commitdiff
2011-03-19 martinahansenworked on match code for ruby Seq class tree | commitdiff
2011-03-19 martinahansenadded test_digest.rb tree | commitdiff
2011-03-19 martinahansensplit digest.rb from seq.rb tree | commitdiff
2011-03-19 martinahansenremoving align.rb code tree | commitdiff
2011-03-19 martinahansenremoving align.rb code tree | commitdiff
2011-03-19 martinahansencleanup of Filsys in ruby code tree | commitdiff
2011-03-18 martinahansenfilesys now polished tree | commitdiff
2011-03-18 martinahansenadded filesys tree | commitdiff
2011-03-18 martinahansenfixed stdin read for fastq and ruby code tree | commitdiff
2011-03-18 martinahansenpolishing stdin for ruby code tree | commitdiff
2011-03-17 martinahansenruby cleanup tree | commitdiff
2011-03-14 martinahansenfixed missing license tree | commitdiff
2011-03-08 martinahansenupdated remove_illumina_adaptor tree | commitdiff
2011-03-07 martinahansenadded hamming distance to adaptor location/clipping... tree | commitdiff
2011-03-07 martinahansenadded hamming_dist method to bits.rb tree | commitdiff
2011-03-07 martinahansenadded bits.rb and test_bits.rb tree | commitdiff
2011-02-20 martinahansenpolished seq.rb tree | commitdiff
2011-02-20 martinahansenadded remove_illumina_adaptor Biopiece tree | commitdiff
2011-02-19 martinahansenadded qual clipping to ruby code tree | commitdiff
2011-02-19 martinahansentried to fix unit testing errs in test_genbank.rb tree | commitdiff
2011-02-19 martinahansenadded Rakefile for unit testing of ruby code tree | commitdiff
2011-02-19 martinahansenadded adaptor_locate and adaptor_clip methods to ruby... tree | commitdiff
2011-02-11 martinahansenfixed typo in sff.rb tree | commitdiff
2011-02-11 martinahansenfixed typo in base36.rb tree | commitdiff
2011-02-11 martinahansenadded xy-coord extraction code to sff.rb tree | commitdiff
2011-02-11 martinahansenadded xy-coord extraction code to sff.rb tree | commitdiff
2011-02-11 martinahansenadded base36.rb Ruby library tree | commitdiff
2011-02-08 martinahansenadded read_sff biopiece tree | commitdiff
2011-02-03 martinahansenadded subseq and subseq_rand methods to seq.rb tree | commitdiff
2011-02-01 martinahansenadded generate_oligos method to seq.rb tree | commitdiff
2011-01-31 martinahansenadd out accessor to Biopieces ruby code tree | commitdiff
2011-01-31 martinahansenrevoking data_out magic tree | commitdiff
2011-01-31 martinahansenadded :data_out magic to Biopeices ruby code tree | commitdiff
2011-01-23 martinahansenadded Seq#to_key method tree | commitdiff
2011-01-22 martinahansenchanged seq names to 0 based in Digest#each tree | commitdiff
2011-01-22 martinahansenfixed missing upcase bug in ruby Seq#Digest::each tree | commitdiff
2011-01-20 martinahansenpolish of bitarray.rb tree | commitdiff
2011-01-14 martinahansenfinishing unit tests for bitarray.rb tree | commitdiff
2011-01-14 martinahansenfixed license text tree | commitdiff
2011-01-14 martinahansenadded bitarray ruby code tree | commitdiff
2010-12-16 martinahansenadded min option to find_homopolymers tree | commitdiff
2010-12-16 martinahansenspeedup fix of max_homopol again tree | commitdiff
2010-12-16 martinahansenspeedup fix of max_homopol tree | commitdiff
2010-12-16 martinahansenadded find_homopolymers biopiece tree | commitdiff
2010-12-10 martinahansengenbank.rb fixes tree | commitdiff
2010-12-09 martinahansenfixed get_seq in genbank.rb tree | commitdiff
2010-12-09 martinahansenfixed another locator bug in genbank.rb tree | commitdiff
2010-12-09 martinahansenfixed cryptic bug in genbank.rb tree | commitdiff
2010-12-09 martinahansenfixed cryptic bug in genbank.rb tree | commitdiff
2010-12-09 martinahansensmall safety add in genbank.rb tree | commitdiff
2010-12-09 martinahansenfixed genbank.rb tree | commitdiff
2010-12-09 martinahansenfixed genbank.rb tree | commitdiff
2010-12-08 martinahansenadded read_genbank tree | commitdiff
2010-11-14 martinahansenadding 00README file to code_ruby dir tree | commitdiff
2010-11-01 martinahansenremoving patscan ruby crap tree | commitdiff
2010-11-01 martinahansenadded patfind.rb tree | commitdiff
2010-10-31 martinahansenfixed aliases in bashrc tree | commitdiff
2010-10-20 martinahansenadded patscan.rb tree | commitdiff
2010-10-15 martinahansenadd tests for analyze_seq tree | commitdiff
2010-10-14 martinahansenported analyze_seq to ruby tree | commitdiff
2010-10-12 martinahansenadded align ruby lib tree | commitdiff
2010-10-12 martinahansenadded fastq ruby lib tree | commitdiff
2010-10-12 martinahansenadded solexa switch to read_fastq tree | commitdiff
2010-10-12 martinahansenupgraded read_fastq and added tests tree | commitdiff
2010-10-11 martinahansenupgraded find_genes tree | commitdiff
2010-09-20 martinahansenfixes and test for digest_seq tree | commitdiff
2010-09-20 martinahansenadded digest_seq Biopiece tree | commitdiff
2010-09-17 martinahansenadded Digest class to ruby code tree | commitdiff
2010-09-16 martinahansenadded reverse method to ruby Seq class tree | commitdiff
2010-09-13 martinahansenadded bin_vals biopiece and tests tree | commitdiff
2010-09-09 martinahansenadded Ruby version check tree | commitdiff
2010-09-09 martinahansenadded progress_meter biopiece tree | commitdiff
2010-09-01 martinahansenreverting ruby unit test to old school tree | commitdiff
2010-09-01 martinahansenreplaced option keys from strings to symbols in ruby... tree | commitdiff
2010-08-20 martinahansenshifted ruby biopiece records to use symbols instead... tree | commitdiff
2010-08-18 martinahansenadded zip reading to read_fasta tree | commitdiff
2010-08-18 martinahansenread_fasta now reads zipped fasta fails again tree | commitdiff
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