git.donarmstrong.com Git - biopieces.git/history

]> git.donarmstrong.com Git - biopieces.git/history - code_ruby

2011-03-29	martinahansen	seq.rb update	tree \| commitdiff
2011-03-29	martinahansen	added final unit test to test_patternmatcher.rb	tree \| commitdiff
2011-03-29	martinahansen	fixed Rakefile	tree \| commitdiff
2011-03-29	martinahansen	removed amatch dependency in ruby code	tree \| commitdiff
2011-03-28	martinahansen	fixed patternmatcher.rb	tree \| commitdiff
2011-03-28	martinahansen	added PatternMatcher to ruby code	tree \| commitdiff
2011-03-20	martinahansen	plain and hd match in ruby Seq.rb now works	tree \| commitdiff
2011-03-19	martinahansen	worked on match code in Seq.rb	tree \| commitdiff
2011-03-19	martinahansen	added rdoc stuff	tree \| commitdiff
2011-03-19	martinahansen	worked on match code for ruby Seq class	tree \| commitdiff
2011-03-19	martinahansen	added test_digest.rb	tree \| commitdiff
2011-03-19	martinahansen	split digest.rb from seq.rb	tree \| commitdiff
2011-03-19	martinahansen	removing align.rb code	tree \| commitdiff
2011-03-19	martinahansen	removing align.rb code	tree \| commitdiff
2011-03-19	martinahansen	cleanup of Filsys in ruby code	tree \| commitdiff
2011-03-18	martinahansen	filesys now polished	tree \| commitdiff
2011-03-18	martinahansen	added filesys	tree \| commitdiff
2011-03-18	martinahansen	fixed stdin read for fastq and ruby code	tree \| commitdiff
2011-03-18	martinahansen	polishing stdin for ruby code	tree \| commitdiff
2011-03-17	martinahansen	ruby cleanup	tree \| commitdiff
2011-03-14	martinahansen	fixed missing license	tree \| commitdiff
2011-03-08	martinahansen	updated remove_illumina_adaptor	tree \| commitdiff
2011-03-07	martinahansen	added hamming distance to adaptor location/clipping...	tree \| commitdiff
2011-03-07	martinahansen	added hamming_dist method to bits.rb	tree \| commitdiff
2011-03-07	martinahansen	added bits.rb and test_bits.rb	tree \| commitdiff
2011-02-20	martinahansen	polished seq.rb	tree \| commitdiff
2011-02-20	martinahansen	added remove_illumina_adaptor Biopiece	tree \| commitdiff
2011-02-19	martinahansen	added qual clipping to ruby code	tree \| commitdiff
2011-02-19	martinahansen	tried to fix unit testing errs in test_genbank.rb	tree \| commitdiff
2011-02-19	martinahansen	added Rakefile for unit testing of ruby code	tree \| commitdiff
2011-02-19	martinahansen	added adaptor_locate and adaptor_clip methods to ruby...	tree \| commitdiff
2011-02-11	martinahansen	fixed typo in sff.rb	tree \| commitdiff
2011-02-11	martinahansen	fixed typo in base36.rb	tree \| commitdiff
2011-02-11	martinahansen	added xy-coord extraction code to sff.rb	tree \| commitdiff
2011-02-11	martinahansen	added xy-coord extraction code to sff.rb	tree \| commitdiff
2011-02-11	martinahansen	added base36.rb Ruby library	tree \| commitdiff
2011-02-08	martinahansen	added read_sff biopiece	tree \| commitdiff
2011-02-03	martinahansen	added subseq and subseq_rand methods to seq.rb	tree \| commitdiff
2011-02-01	martinahansen	added generate_oligos method to seq.rb	tree \| commitdiff
2011-01-31	martinahansen	add out accessor to Biopieces ruby code	tree \| commitdiff
2011-01-31	martinahansen	revoking data_out magic	tree \| commitdiff
2011-01-31	martinahansen	added :data_out magic to Biopeices ruby code	tree \| commitdiff
2011-01-23	martinahansen	added Seq#to_key method	tree \| commitdiff
2011-01-22	martinahansen	changed seq names to 0 based in Digest#each	tree \| commitdiff
2011-01-22	martinahansen	fixed missing upcase bug in ruby Seq#Digest::each	tree \| commitdiff
2011-01-20	martinahansen	polish of bitarray.rb	tree \| commitdiff
2011-01-14	martinahansen	finishing unit tests for bitarray.rb	tree \| commitdiff
2011-01-14	martinahansen	fixed license text	tree \| commitdiff
2011-01-14	martinahansen	added bitarray ruby code	tree \| commitdiff
2010-12-16	martinahansen	added min option to find_homopolymers	tree \| commitdiff
2010-12-16	martinahansen	speedup fix of max_homopol again	tree \| commitdiff
2010-12-16	martinahansen	speedup fix of max_homopol	tree \| commitdiff
2010-12-16	martinahansen	added find_homopolymers biopiece	tree \| commitdiff
2010-12-10	martinahansen	genbank.rb fixes	tree \| commitdiff
2010-12-09	martinahansen	fixed get_seq in genbank.rb	tree \| commitdiff
2010-12-09	martinahansen	fixed another locator bug in genbank.rb	tree \| commitdiff
2010-12-09	martinahansen	fixed cryptic bug in genbank.rb	tree \| commitdiff
2010-12-09	martinahansen	fixed cryptic bug in genbank.rb	tree \| commitdiff
2010-12-09	martinahansen	small safety add in genbank.rb	tree \| commitdiff
2010-12-09	martinahansen	fixed genbank.rb	tree \| commitdiff
2010-12-09	martinahansen	fixed genbank.rb	tree \| commitdiff
2010-12-08	martinahansen	added read_genbank	tree \| commitdiff
2010-11-14	martinahansen	adding 00README file to code_ruby dir	tree \| commitdiff
2010-11-01	martinahansen	removing patscan ruby crap	tree \| commitdiff
2010-11-01	martinahansen	added patfind.rb	tree \| commitdiff
2010-10-31	martinahansen	fixed aliases in bashrc	tree \| commitdiff
2010-10-20	martinahansen	added patscan.rb	tree \| commitdiff
2010-10-15	martinahansen	add tests for analyze_seq	tree \| commitdiff
2010-10-14	martinahansen	ported analyze_seq to ruby	tree \| commitdiff
2010-10-12	martinahansen	added align ruby lib	tree \| commitdiff
2010-10-12	martinahansen	added fastq ruby lib	tree \| commitdiff
2010-10-12	martinahansen	added solexa switch to read_fastq	tree \| commitdiff
2010-10-12	martinahansen	upgraded read_fastq and added tests	tree \| commitdiff
2010-10-11	martinahansen	upgraded find_genes	tree \| commitdiff
2010-09-20	martinahansen	fixes and test for digest_seq	tree \| commitdiff
2010-09-20	martinahansen	added digest_seq Biopiece	tree \| commitdiff
2010-09-17	martinahansen	added Digest class to ruby code	tree \| commitdiff
2010-09-16	martinahansen	added reverse method to ruby Seq class	tree \| commitdiff
2010-09-13	martinahansen	added bin_vals biopiece and tests	tree \| commitdiff
2010-09-09	martinahansen	added Ruby version check	tree \| commitdiff
2010-09-09	martinahansen	added progress_meter biopiece	tree \| commitdiff
2010-09-01	martinahansen	reverting ruby unit test to old school	tree \| commitdiff
2010-09-01	martinahansen	replaced option keys from strings to symbols in ruby...	tree \| commitdiff
2010-08-20	martinahansen	shifted ruby biopiece records to use symbols instead...	tree \| commitdiff
2010-08-18	martinahansen	added zip reading to read_fasta	tree \| commitdiff
2010-08-18	martinahansen	read_fasta now reads zipped fasta fails again	tree \| commitdiff
2010-08-17	martinahansen	replacing read_fasta with ruby version	tree \| commitdiff
2010-08-17	martinahansen	replacing read_fasta with ruby version	tree \| commitdiff
2010-08-16	martinahansen	updating seq.rb	tree \| commitdiff
2010-08-16	martinahansen	updateing seq.rb	tree \| commitdiff
2010-08-13	martinahansen	fixed type bug in ruby code	tree \| commitdiff
2010-08-11	martinahansen	ruby code cleanup	tree \| commitdiff
2010-08-09	martinahansen	added lisence to ruby code	tree \| commitdiff
2010-08-06	martinahansen	added rdoc	tree \| commitdiff
2010-08-06	martinahansen	fixed ruby test code	tree \| commitdiff
2010-08-06	martinahansen	added swapcase_seq written in RUBY	tree \| commitdiff
2010-08-06	martinahansen	ruby exit status battle part #12312423	tree \| commitdiff
2010-08-05	martinahansen	added test_read_solexa to tests	tree \| commitdiff
2010-08-04	martinahansen	asdfasdr	tree \| commitdiff
2010-08-04	martinahansen	polishing ruby code	tree \| commitdiff
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