git.donarmstrong.com Git - biopieces.git/history

]> git.donarmstrong.com Git - biopieces.git/history - code_perl/Maasha/Biopieces.pm

[biopieces.git] / code_perl / Maasha / Biopieces.pm

2008-09-25	martinahansen	fixed rename bug	blob \| commitdiff \| raw
2008-09-23	martinahansen	fixed STDERR and verbose	blob \| commitdiff \| raw \| diff to current
2008-09-17	martinahansen	fixed tmp dir cleaner in Biopieces.pm	blob \| commitdiff \| raw \| diff to current
2008-09-16	martinahansen	added 5prime adaptor feature to remove_adaptor	blob \| commitdiff \| raw \| diff to current
2008-09-16	martinahansen	inline::c code for adaptor removal	blob \| commitdiff \| raw \| diff to current
2008-09-08	martinahansen	fixed 0 offset bug in remove_adaptor	blob \| commitdiff \| raw \| diff to current
2008-09-03	martinahansen	removed wiggle options from upload_to_ucsc	blob \| commitdiff \| raw \| diff to current
2008-09-03	martinahansen	fixed -S and -L for calc_fixedstep biopiece	blob \| commitdiff \| raw \| diff to current
2008-09-03	martinahansen	added calc_fixedstep biopiece	blob \| commitdiff \| raw \| diff to current
2008-09-01	martinahansen	read_solexa now handles both decimal and octal scores	blob \| commitdiff \| raw \| diff to current
2008-08-29	martinahansen	fixed bug in remove_adaptor	blob \| commitdiff \| raw \| diff to current
2008-08-29	martinahansen	fixed minor bugs in remove_adaptor	blob \| commitdiff \| raw \| diff to current
2008-08-29	martinahansen	added remove_adaptor biopiece	blob \| commitdiff \| raw \| diff to current
2008-08-29	martinahansen	fixed UCSC::get_psl_entry	blob \| commitdiff \| raw \| diff to current
2008-08-26	martinahansen	fixed bug in table name check	blob \| commitdiff \| raw \| diff to current
2008-08-26	martinahansen	added fixedStep format to upload_to_ucsc	blob \| commitdiff \| raw \| diff to current
2008-08-25	martinahansen	added --verbose run option for blast_seq	blob \| commitdiff \| raw \| diff to current
2008-08-22	martinahansen	fixed read_soft to deal with stupid Soft format feature	blob \| commitdiff \| raw \| diff to current
2008-08-22	martinahansen	added option to read_soft for selecting specific samples	blob \| commitdiff \| raw \| diff to current
2008-08-21	martinahansen	more updates of c and fixes to upload_to_ucsc	blob \| commitdiff \| raw \| diff to current
2008-08-14	martinahansen	updated read_solexa	blob \| commitdiff \| raw \| diff to current
2008-08-01	martinahansen	changed result key of count_records	blob \| commitdiff \| raw \| diff to current
2008-07-29	martinahansen	finished biopiece merge_records	blob \| commitdiff \| raw \| diff to current
2008-07-28	martinahansen	added new biopiece merge_records	blob \| commitdiff \| raw \| diff to current
2008-07-25	martinahansen	fixed zero entry tmp file bug in soap_seq	blob \| commitdiff \| raw \| diff to current
2008-07-25	martinahansen	fixed another annoying bug in clean_tmp()	blob \| commitdiff \| raw \| diff to current
2008-07-25	martinahansen	corrected bug in clean tmp to deal with permision problem	blob \| commitdiff \| raw \| diff to current
2008-07-24	martinahansen	added seed_size to soap_seq	blob \| commitdiff \| raw \| diff to current
2008-07-24	martinahansen	corrected ugly bug	blob \| commitdiff \| raw \| diff to current
2008-07-24	martinahansen	fixed cleanup of temporary files	blob \| commitdiff \| raw \| diff to current
2008-07-23	martinahansen	begin of status update	blob \| commitdiff \| raw \| diff to current
2008-07-22	martinahansen	added record2fasta to allow for aliasing of SEQ_NAME...	blob \| commitdiff \| raw \| diff to current
2008-07-21	martinahansen	fixed ugly bug in get_record	blob \| commitdiff \| raw \| diff to current
2008-07-21	martinahansen	corrected an ugly bug in get_record	blob \| commitdiff \| raw \| diff to current
2008-07-21	martinahansen	more soap_seq debugging	blob \| commitdiff \| raw \| diff to current
2008-07-21	martinahansen	debugging soap_seq	blob \| commitdiff \| raw \| diff to current
2008-07-21	martinahansen	added soap_seq	blob \| commitdiff \| raw \| diff to current
2008-07-21	martinahansen	changed wib dir from BP_DATA to ~/ucsc	blob \| commitdiff \| raw \| diff to current
2008-07-21	martinahansen	fixed local and global logging	blob \| commitdiff \| raw \| diff to current
2008-07-14	martinahansen	added phastcons to format_genome	blob \| commitdiff \| raw \| diff to current
2008-07-14	martinahansen	removed create_fixedstep_index	blob \| commitdiff \| raw \| diff to current
2008-07-14	martinahansen	added create_fixedstep_index	blob \| commitdiff \| raw \| diff to current
2008-07-14	martinahansen	added write_fixedstep	blob \| commitdiff \| raw \| diff to current
2008-07-14	martinahansen	added read_fixedstep	blob \| commitdiff \| raw \| diff to current
2008-07-10	martinahansen	fixed all defects from bug list	blob \| commitdiff \| raw \| diff to current
2008-07-10	martinahansen	added format_genome and list_genomes	blob \| commitdiff \| raw \| diff to current
2008-07-09	martinahansen	fixed print_usage	blob \| commitdiff \| raw \| diff to current
2008-07-09	martinahansen	fixed print_usage	blob \| commitdiff \| raw \| diff to current
2008-07-09	martinahansen	added --help	blob \| commitdiff \| raw \| diff to current
2008-07-09	martinahansen	removed & from all Perl Modules	blob \| commitdiff \| raw \| diff to current
2008-06-27	martinahansen	new wiki usage test	blob \| commitdiff \| raw \| diff to current
2008-06-26	martinahansen	more renaming	blob \| commitdiff \| raw \| diff to current
2008-06-26	martinahansen	this will probably break	blob \| commitdiff \| raw \| diff to current

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