git.donarmstrong.com Git - biopieces.git/history

]> git.donarmstrong.com Git - biopieces.git/history - bp_bin

2011-05-09	martinahansen	fixed indentation in uclust_seq	tree \| commitdiff
2011-05-06	martinahansen	added full switch to find_genes	tree \| commitdiff
2011-05-06	martinahansen	removing sequence file from assemble_seq*	tree \| commitdiff
2011-05-05	martinahansen	polished asseble_seq_velvet	tree \| commitdiff
2011-05-05	martinahansen	removed name option from asseble_seq_idba	tree \| commitdiff
2011-05-04	martinahansen	added assemble_seq_velvet draft biopiece	tree \| commitdiff
2011-05-04	martinahansen	refactoring arg name in assemble_seq_idba	tree \| commitdiff
2011-05-04	martinahansen	added --clean to assemble_seq_idba	tree \| commitdiff
2011-05-03	martinahansen	polished assemble_seq_idba	tree \| commitdiff
2011-05-03	martinahansen	added assemble_seq_idba	tree \| commitdiff
2011-05-03	martinahansen	made plot_scores 1-based	tree \| commitdiff
2011-05-03	martinahansen	corrected plot_matches missing -persists switch	tree \| commitdiff
2011-05-03	martinahansen	added titles to plot_scores	tree \| commitdiff
2011-05-02	martinahansen	fixed typo in analyce_gc	tree \| commitdiff
2011-05-02	martinahansen	code update	tree \| commitdiff
2011-05-02	martinahansen	ported plot_scores to ruby	tree \| commitdiff
2011-05-02	martinahansen	removed redundant line from plot_scores	tree \| commitdiff
2011-05-02	martinahansen	testing unspecified features	tree \| commitdiff
2011-04-19	martinahansen	polishing find_adaptor	tree \| commitdiff
2011-04-19	martinahansen	added cache option to find_adaptor	tree \| commitdiff
2011-04-19	martinahansen	added cache option to find_adaptor	tree \| commitdiff
2011-04-18	martinahansen	added clip_adaptor biopiece	tree \| commitdiff
2011-04-18	martinahansen	fixed bug in find_adaptor	tree \| commitdiff
2011-04-18	martinahansen	fixed bug in find_adaptor	tree \| commitdiff
2011-04-18	martinahansen	added find_adaptor biopiece	tree \| commitdiff
2011-04-14	martinahansen	added length check to read_454	tree \| commitdiff
2011-04-14	martinahansen	fixed missing qual trimming in remove_mids	tree \| commitdiff
2011-04-13	martinahansen	added remove_mids	tree \| commitdiff
2011-03-30	martinahansen	updated find_mids	tree \| commitdiff
2011-03-15	martinahansen	fixed bug in bwa_seq	tree \| commitdiff
2011-03-08	martinahansen	updated remove_illumina_adaptor	tree \| commitdiff
2011-03-07	martinahansen	updated remove_illumina_adaptor	tree \| commitdiff
2011-02-20	martinahansen	added remove_illumina_adaptor Biopiece	tree \| commitdiff
2011-02-08	martinahansen	added read_sff biopiece	tree \| commitdiff
2011-02-03	martinahansen	refactored shred_seq	tree \| commitdiff
2011-02-03	martinahansen	crude polish of shred_seq	tree \| commitdiff
2011-02-01	martinahansen	added analyze_assembly biopiece	tree \| commitdiff
2011-02-01	martinahansen	added kmer_freq biopiece and tests	tree \| commitdiff
2011-01-31	martinahansen	fixed bug in calc_N50	tree \| commitdiff
2011-01-31	martinahansen	added calc_N50	tree \| commitdiff
2011-01-31	martinahansen	remove calc_n50	tree \| commitdiff
2011-01-31	martinahansen	removing calc_N50	tree \| commitdiff
2011-01-31	martinahansen@gmai...	argh!	tree \| commitdiff
2011-01-31	martinahansen	added calc_N50 biopiece	tree \| commitdiff
2011-01-30	martinahansen	polished shred_seq	tree \| commitdiff
2011-01-30	martinahansen	polished shred_seq	tree \| commitdiff
2011-01-29	martinahansen	fixed bug in shred_seq	tree \| commitdiff
2011-01-29	martinahansen	added shred_seq biopiece	tree \| commitdiff
2011-01-22	martinahansen	added S_BEG and S_END keys to digest_seq	tree \| commitdiff
2011-01-20	martinahansen	slight cleanup of find_gaps	tree \| commitdiff
2011-01-17	martinahansen	added tests for find_gaps	tree \| commitdiff
2011-01-14	martinahansen	added S_LEN to find_gaps	tree \| commitdiff
2011-01-10	martinahansen	fixed SEQ_LEN bug in transliterate_seq	tree \| commitdiff
2010-12-31	martinahansen	polishing find_mids	tree \| commitdiff
2010-12-21	martinahansen	fixed bug in bwa_seq	tree \| commitdiff
2010-12-17	martinahansen	added contributed biopieces calc_density	tree \| commitdiff
2010-12-16	martinahansen	added min option to find_homopolymers	tree \| commitdiff
2010-12-16	martinahansen	added find_homopolymers biopiece	tree \| commitdiff
2010-12-10	martinahansen	added join_seq biopiece	tree \| commitdiff
2010-12-10	martinahansen	added shuffle_records	tree \| commitdiff
2010-12-08	martinahansen	added read_genbank	tree \| commitdiff
2010-11-18	martinahansen	fixed bug in uclust_seq	tree \| commitdiff
2010-11-18	martinahansen	added --comp switch to uclust_seq	tree \| commitdiff
2010-11-10	martinahansen	fixed find_mids to locate even low q mids	tree \| commitdiff
2010-11-09	martinahansen	added roche MID tags to find_mids	tree \| commitdiff
2010-11-02	martinahansen	added find_mids biopiece tests	tree \| commitdiff
2010-11-02	martinahansen	fixed bug in find_mids	tree \| commitdiff
2010-11-02	martinahansen	added find_mids biopiece	tree \| commitdiff
2010-11-02	martinahansen	fixed bug in clip_seq	tree \| commitdiff
2010-11-02	martinahansen	added clip_seq biopiece	tree \| commitdiff
2010-10-15	martinahansen	polishing min max sum etc	tree \| commitdiff
2010-10-15	martinahansen	polished sum_vals and added tests	tree \| commitdiff
2010-10-15	martinahansen	added tests for mean_vals	tree \| commitdiff
2010-10-15	martinahansen	add tests for analyze_seq	tree \| commitdiff
2010-10-15	martinahansen	trouble shooting buffering problem	tree \| commitdiff
2010-10-14	martinahansen	ported analyze_seq to ruby	tree \| commitdiff
2010-10-13	martinahansen	fixed scores in bwa_seq	tree \| commitdiff
2010-10-13	martinahansen	changed bowtie_seq to use phred64	tree \| commitdiff
2010-10-13	martinahansen	polished read_454 and added tests	tree \| commitdiff
2010-10-13	martinahansen	polished plot_scores	tree \| commitdiff
2010-10-12	martinahansen	slight bug fix of write_fastq	tree \| commitdiff
2010-10-12	martinahansen	upgraded scores_to_dec	tree \| commitdiff
2010-10-12	martinahansen	upgraded mask_seq	tree \| commitdiff
2010-10-12	martinahansen	added solexa switch to read_fastq	tree \| commitdiff
2010-10-12	martinahansen	upgraded read_fastq and added tests	tree \| commitdiff
2010-10-11	martinahansen	upgraded find_genes	tree \| commitdiff
2010-09-23	martinahansen	cleanup of uclust_seq	tree \| commitdiff
2010-09-22	martinahansen	polishing on uclust_seq	tree \| commitdiff
2010-09-21	martinahansen	added uclust_seq Biopiece - Work in progress!	tree \| commitdiff
2010-09-20	martinahansen	fixed typo in text in digest_seq	tree \| commitdiff
2010-09-20	martinahansen	fixes and test for digest_seq	tree \| commitdiff
2010-09-20	martinahansen	added digest_seq Biopiece	tree \| commitdiff
2010-09-16	martinahansen	added pcr_seq Biopiece	tree \| commitdiff
2010-09-13	martinahansen	added bin_vals biopiece and tests	tree \| commitdiff
2010-09-09	martinahansen	ported length_seq to ruby	tree \| commitdiff
2010-09-09	martinahansen	fixing length_seq	tree \| commitdiff
2010-09-09	martinahansen	slight fix of trailing newline in progress_meter	tree \| commitdiff
2010-09-09	martinahansen	slight fix of trailing newline in progress_meter	tree \| commitdiff
2010-09-09	martinahansen	slight fix of trailing newline in progress_meter	tree \| commitdiff
2010-09-09	martinahansen	slight fix of printf in progress_meter	tree \| commitdiff
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