2010-07-22 |
westcott | fixes while testing 1.12.0 |
tree | commitdiff |
2010-07-19 |
westcott | added ordergroup parameter to read.otu |
tree | commitdiff |
2010-07-19 |
pschloss | pat's updates on 7/19/10 |
tree | commitdiff |
2010-07-14 |
pschloss | pat's changes to trim.seqs |
tree | commitdiff |
2010-07-14 |
westcott | started work on sffinfo command. fixed bug across... |
tree | commitdiff |
2010-07-06 |
pschloss | sens.spec changes |
tree | commitdiff |
2010-06-22 |
westcott | added mpi code to cluster.split command |
tree | commitdiff |
2010-06-21 |
westcott | added degap.seqs command |
tree | commitdiff |
2010-06-21 |
westcott | modified chimera commands to process multiple fasta... |
tree | commitdiff |
2010-06-14 |
westcott | fixed pintail bug |
tree | commitdiff |
2010-06-09 |
pschloss | added weightedlinkage.cpp |
tree | commitdiff |
2010-06-02 |
westcott | added sort parameter to get.otulist |
tree | commitdiff |
2010-06-02 |
westcott | added classify.otu command |
tree | commitdiff |
2010-05-27 |
westcott | fixed project |
tree | commitdiff |
2010-05-26 |
pschloss | fixed bugs with trim.seqs and bdiffs |
tree | commitdiff |
2010-05-20 |
westcott | added cluster.split command |
tree | commitdiff |
2010-05-18 |
westcott | added split.abund comand |
tree | commitdiff |
2010-05-12 |
westcott | modified freq parameter be a percentage of numSeqs... |
tree | commitdiff |
2010-05-11 |
westcott | added clearcut command |
tree | commitdiff |
2010-05-10 |
westcott | added chop.seqs command |
tree | commitdiff |
2010-05-10 |
westcott | added make.group command |
tree | commitdiff |
2010-05-07 |
westcott | modified trim.seqs to account for primers of different... |
tree | commitdiff |
2010-05-04 |
westcott | added phylo.diversity command. added hard parameter... |
tree | commitdiff |
2010-04-30 |
westcott | paralellized trim.seqs |
tree | commitdiff |
2010-04-28 |
westcott | added set.logfile command |
tree | commitdiff |
2010-04-27 |
westcott | reworked the classifiers summary file added groupfile... |
tree | commitdiff |
2010-04-26 |
westcott | made classifier faster |
tree | commitdiff |
2010-04-14 |
pschloss | pat's minor edits to distance calculations |
tree | commitdiff |
2010-04-14 |
westcott | some changes while testing 1.9 |
tree | commitdiff |
2010-04-07 |
westcott | added MPI code, broke up chimera.seqs into 5 separated... |
tree | commitdiff |
2010-03-12 |
westcott | added MPI to dist.seqs command |
tree | commitdiff |
2010-03-04 |
westcott | mothur with external build |
tree | commitdiff |
2010-03-04 |
westcott | changes to filter.seqs |
tree | commitdiff |
2010-02-26 |
westcott | created mothurOut class to handle logfiles |
tree | commitdiff |
2010-02-25 |
westcott | added parse.list command |
tree | commitdiff |
2010-02-12 |
westcott | working on chimeras |
tree | commitdiff |
2010-02-02 |
westcott | fixed bugs for 1.8 |
tree | commitdiff |
2010-01-27 |
westcott | added distance search method to classify.seqs |
tree | commitdiff |
2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
tree | commitdiff |
2010-01-19 |
westcott | added out.hierarchy command |
tree | commitdiff |
2010-01-19 |
pschloss | pat's mods to morisitahorn and pre.cluster |
tree | commitdiff |
2010-01-14 |
westcott | added formatmatrix, formatcolumn, and formatphylip... |
tree | commitdiff |
2010-01-04 |
westcott | added pca command |
tree | commitdiff |
2009-12-23 |
westcott | precluster command finished |
tree | commitdiff |
2009-12-21 |
westcott | fixed some bugs and added mgcluster command |
tree | commitdiff |
2009-12-09 |
westcott | added sorted parameter to get.oturep, added error check... |
tree | commitdiff |
2009-12-08 |
westcott | added list parameter to get.seqs and remove.seqs and... |
tree | commitdiff |
2009-11-25 |
pschloss | version for 10.5 |
tree | commitdiff |
2009-11-24 |
pschloss | fixed splash page citation |
tree | commitdiff |
2009-11-23 |
westcott | added phylotype command which reads a taxonomy file... |
tree | commitdiff |
2009-11-17 |
westcott | final fixes for 1.7 |
tree | commitdiff |
2009-11-13 |
westcott | finished work on classify.seqs bayesian method and... |
tree | commitdiff |
2009-11-05 |
westcott | started work on classify.seqs command. changed the... |
tree | commitdiff |
2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely... |
tree | commitdiff |
2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount... |
tree | commitdiff |
2009-09-28 |
westcott | started adding chimeraslayer method and fixed minor... |
tree | commitdiff |
2009-09-23 |
westcott | added get.sharedotu command |
tree | commitdiff |
2009-09-18 |
westcott | adding more error checking for list and group files... |
tree | commitdiff |
2009-09-15 |
westcott | fixed some issues while testing 1.6 |
tree | commitdiff |
2009-09-09 |
westcott | continued work on chimeras and fixed bug in trim.seqs... |
tree | commitdiff |
2009-09-01 |
westcott | changed raredisplay to use vectors instead of files |
tree | commitdiff |
2009-09-01 |
westcott | added more descriptive error messages to sharedlist |
tree | commitdiff |
2009-08-31 |
westcott | checking in chimera files in progress after move to... |
tree | commitdiff |
2009-08-12 |
westcott | removing mallard |
tree | commitdiff |
2009-08-11 |
westcott | chimera.seqs pintail is working. |
tree | commitdiff |
2009-08-10 |
pschloss | mothur-v.1.5.0 |
tree | commitdiff |
2009-07-30 |
pschloss | pat's edits prior to v.1.5 |
tree | commitdiff |
2009-07-26 |
westcott | fixed bug with aligner in database class, worked on... |
tree | commitdiff |
2009-07-22 |
westcott | worked on chimeras |
tree | commitdiff |
2009-07-10 |
westcott | added sorted option to get.rabund command |
tree | commitdiff |
2009-07-08 |
westcott | added stricter compilation requirements and fixed resul... |
tree | commitdiff |
2009-07-08 |
westcott | added system command |
tree | commitdiff |
2009-07-08 |
westcott | added remove.seqs command |
tree | commitdiff |
2009-07-08 |
westcott | added get.seqs command |
tree | commitdiff |
2009-07-08 |
westcott | added list.seqs command |
tree | commitdiff |
2009-07-02 |
westcott | made changes to concensus to find a better tree. also... |
tree | commitdiff |
2009-06-29 |
westcott | fixed misspelling on consensus |
tree | commitdiff |
2009-06-29 |
westcott | modified read.otu and shared command |
tree | commitdiff |
2009-06-22 |
westcott | worked on parselist and shared commands, removing memor... |
tree | commitdiff |
2009-06-21 |
pschloss | This is v.1.4.0 |
tree | commitdiff |
2009-06-16 |
pschloss | a few minor things - pds |
tree | commitdiff |
2009-06-15 |
westcott | fixing minor bugs |
tree | commitdiff |
2009-06-15 |
westcott | removed validcommands and put its checking in commandfa... |
tree | commitdiff |
2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
tree | commitdiff |
2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
tree | commitdiff |
2009-06-08 |
westcott | added heatmap.sim command and changed heatmap to heatma... |
tree | commitdiff |
2009-06-08 |
pschloss | added some features to trim.seqs |
tree | commitdiff |
2009-06-06 |
pschloss | added trim.seqs command |
tree | commitdiff |
2009-06-06 |
pschloss | added reverse.seqs command |
tree | commitdiff |
2009-06-04 |
pschloss | remove some files |
tree | commitdiff |
2009-06-04 |
westcott | removed readseqs, readfasta, readnexus, readclustal... |
tree | commitdiff |
2009-06-04 |
pschloss | modified filter.seqs to not store all seqs in memory... |
tree | commitdiff |
2009-06-04 |
westcott | fixed some bugs |
tree | commitdiff |
2009-06-03 |
westcott | added get.rabund and get.sabund command and fixed bug... |
tree | commitdiff |
2009-06-03 |
pschloss | addition of summary.seq command [pds] |
tree | commitdiff |
2009-05-24 |
pschloss | This contains Pat's bug fixes and updates. It represen... |
tree | commitdiff |
2009-05-21 |
westcott | modified bin.seqs and get.oturep commands to include... |
tree | commitdiff |
2009-05-21 |
westcott | fixed Thomas' calculators |
tree | commitdiff |
2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
tree | commitdiff |
2009-05-18 |
westcott | added shen calculator |
tree | commitdiff |
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