From: Don Armstrong Date: Thu, 22 Feb 2018 04:24:23 +0000 (-0800) Subject: add keywords specific to CSU position X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=refs%2Fheads%2Fjobs%2Flms_specialist_csu_sac;p=resume.git add keywords specific to CSU position --- diff --git a/don_armstrong_resume.org b/don_armstrong_resume.org index 456986b..283de29 100644 --- a/don_armstrong_resume.org +++ b/don_armstrong_resume.org @@ -64,9 +64,16 @@ ** Batchelor of Science (BS) in Biology \hfill UC Riverside * Skills -** Programming Languages +** Programming + [[http://r-project.org][R]], [[http://www.perl.org][Perl]], sh (bash, POSIX, and zsh), SQL, PL/SQL, C/C++, HTML, CSS, javascript + + Algorithm design, data structure design, relational database + design, file format specifications, API/ABI compatibility +** Systems Administration + + Data/system security, disaster recovery procedures + + Systems specifications, configuration, and integration with + existing systems. + + Monitoring and performance analysis ** Applications and Daemons + Web: apache, ngix, varnish, REST, SOAP + SQL servers: PostgreSQL, MySQL (including failover and replication) @@ -90,20 +97,6 @@ ** Statistics + Statistical modeling in very large datasets + Addressing confounders and batch effects -** Genomics and Epigenomics -+ NGS and array-based Genomics and Epigenomics of complex human - diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina - bead arrays, and Affymetrix microarrays from sample collection to - publication. -+ Reproducible, scalable bioinformatics analysis using make, - nextflow, and cwl based workflows on cloud- and cluster-based - systems on terabyte-scale datasets -+ Alignment, annotation, and variant calling using existing and custom - software, including GATK, bwa, STAR, and kallisto. -+ Correcting for and experimental design to overcome multiple - testing, confounders, and batch effects using Bayesian and - frequentist methods approaches -+ Using evolutionary genomics to identify causal human variants ** Big Data + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure) + Inter-process communication: MPI, OpenMP @@ -139,20 +132,3 @@ + Multiple presentations on EWAS of PTSD, genetics of SLE, and Open Source: https://dla2.us/pres -* Funding and Awards -** Grants -+ 2017 R Consortium: *[[https://www.r-consortium.org/blog/2017/04/03/q1-2017-isc-grants][Adding Linux Binary Builders to R-Hub]]* Role: - Co-PI -+ 2015 Blue Waters Allocation Grant: *Making ancestral trees using Bayesian - inference to identify disease-causing genetic variants* Role: - Primary Investigator -+ *Tracking placenta and uterine funciton using urinary extracellular vesicles* (R21 - RFA-HD-16-037) Role: Key Personnel -+ *NIAMS* R01-AR045650-04 *Genetics of Childhood Onset SLE* to Chaim O. Jacob. - Role: Key Personnel -** Scholarships and Fellowships -+ 2001--2003: University of California, Riverside Doctoral Fellowship -+ 1997--2001: Regents of the University of California Scholarship. - - -