From: Don Armstrong <don@donarmstrong.com>
Date: Mon, 16 Dec 2013 20:22:56 +0000 (-0800)
Subject: start adding debugging to trimoligos
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=refs%2Fheads%2Fdon%2Ftrimoligos;p=mothur.git

start adding debugging to trimoligos
---

diff --git a/trimoligos.cpp b/trimoligos.cpp
index 0f2a9cb..b17542a 100644
--- a/trimoligos.cpp
+++ b/trimoligos.cpp
@@ -845,6 +845,7 @@ int TrimOligos::stripBarcode(Sequence& forwardSeq, Sequence& reverseSeq, Quality
 //*******************************************************************/
 int TrimOligos::stripPairedBarcode(Sequence& seq, QualityScores& qual, int& group){
     try {
+      m->debugOut("Stripping paired barcode");
         //look for forward barcode
         string rawSeq = seq.getUnaligned();
         int success = bdiffs + 1;	//guilty until proven innocent