From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 6 Sep 2011 06:26:08 +0000 (+0000)
Subject: added tests to remove_mids
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=fa8fb42787c08a5faefb3fe5ef04017be6b7b840;p=biopieces.git

added tests to remove_mids

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1519 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_test/out/remove_mids.out.3 b/bp_test/out/remove_mids.out.3
new file mode 100644
index 0000000..a791302
--- /dev/null
+++ b/bp_test/out/remove_mids.out.3
@@ -0,0 +1,52 @@
+SEQ_NAME: test_RL12_0_mismatches
+SEQ: gtgactgact
+SEQ_LEN: 10
+MID: ACTCGCGTCGT
+MID_NAME: RL12
+MID_POS: 4
+MID_LEN: 11
+MID_MISMATCHES: 0
+---
+SEQ_NAME: test_RL12_1_mismatches
+SEQ: gtgactgact
+SEQ_LEN: 10
+MID: ACTCGCGTCGT
+MID_NAME: RL12
+MID_POS: 4
+MID_LEN: 11
+MID_MISMATCHES: 1
+---
+SEQ_NAME: test_RL12_2_mismatches
+SEQ: atcgACTCaCcTCGTgtgactgact
+SEQ_LEN: 25
+---
+SEQ_NAME: test_RL12_2_mismatches_repeat
+SEQ: atcgACTCaCcTCGTgtgactgact
+SEQ_LEN: 25
+---
+SEQ_NAME: test_GS99_0_mismatches
+SEQ: gtagtagtagt
+SEQ_LEN: 11
+MID: CTGTACATAC
+MID_NAME: MID99
+MID_POS: 4
+MID_LEN: 10
+MID_MISMATCHES: 0
+---
+SEQ_NAME: test_GS99_1_mismatches
+SEQ: gtagtagtagt
+SEQ_LEN: 11
+MID: CTGTACATAC
+MID_NAME: MID99
+MID_POS: 4
+MID_LEN: 10
+MID_MISMATCHES: 1
+---
+SEQ_NAME: test_GS99_2_mismatches
+SEQ: atcgCTGTtCAgACgtagtagtagt
+SEQ_LEN: 25
+---
+SEQ_NAME: test_GS99_2_mismatches_repeat
+SEQ: atcgCTGTtCAgACgtagtagtagt
+SEQ_LEN: 25
+---
diff --git a/bp_test/out/remove_mids.out.4 b/bp_test/out/remove_mids.out.4
new file mode 100644
index 0000000..319808a
--- /dev/null
+++ b/bp_test/out/remove_mids.out.4
@@ -0,0 +1,72 @@
+SEQ_NAME: test_RL12_0_mismatches
+SEQ: gtgactgact
+SEQ_LEN: 10
+MID: ACTCGCGTCGT
+MID_NAME: RL12
+MID_POS: 4
+MID_LEN: 11
+MID_MISMATCHES: 0
+---
+SEQ_NAME: test_RL12_1_mismatches
+SEQ: gtgactgact
+SEQ_LEN: 10
+MID: ACTCGCGTCGT
+MID_NAME: RL12
+MID_POS: 4
+MID_LEN: 11
+MID_MISMATCHES: 1
+---
+SEQ_NAME: test_RL12_2_mismatches
+SEQ: gtgactgact
+SEQ_LEN: 10
+MID: ACTCGCGTCGT
+MID_NAME: RL12
+MID_POS: 4
+MID_LEN: 11
+MID_MISMATCHES: 2
+---
+SEQ_NAME: test_RL12_2_mismatches_repeat
+SEQ: gtgactgact
+SEQ_LEN: 10
+MID: ACTCACCTCGT
+MID_NAME: 
+MID_POS: 4
+MID_LEN: 11
+MID_MISMATCHES: 0
+---
+SEQ_NAME: test_GS99_0_mismatches
+SEQ: gtagtagtagt
+SEQ_LEN: 11
+MID: CTGTACATAC
+MID_NAME: MID99
+MID_POS: 4
+MID_LEN: 10
+MID_MISMATCHES: 0
+---
+SEQ_NAME: test_GS99_1_mismatches
+SEQ: gtagtagtagt
+SEQ_LEN: 11
+MID: CTGTACATAC
+MID_NAME: MID99
+MID_POS: 4
+MID_LEN: 10
+MID_MISMATCHES: 1
+---
+SEQ_NAME: test_GS99_2_mismatches
+SEQ: gtagtagtagt
+SEQ_LEN: 11
+MID: CTGTACATAC
+MID_NAME: MID99
+MID_POS: 4
+MID_LEN: 10
+MID_MISMATCHES: 2
+---
+SEQ_NAME: test_GS99_2_mismatches_repeat
+SEQ: gtagtagtagt
+SEQ_LEN: 11
+MID: CTGTTCAGAC
+MID_NAME: 
+MID_POS: 4
+MID_LEN: 10
+MID_MISMATCHES: 0
+---