From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 19 Sep 2012 11:19:11 +0000 (+0000)
Subject: fixed database type guess for blast_seq
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=f4d855b1960c1ee94da3e5300babf4939a16e57d;p=biopieces.git

fixed database type guess for blast_seq

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1932 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/blast_seq b/bp_bin/blast_seq
index 3c4df0d..ccca6d4 100755
--- a/bp_bin/blast_seq
+++ b/bp_bin/blast_seq
@@ -174,7 +174,7 @@ sub guess_database_type
     # a .phr file exists.
 
     # Returns string;
-    if ( -f $options->{ 'database' } . ".phr" ) {
+    if ( -f $options->{ 'database' } . ".phr" or -f $options->{ 'database' } . ".pal" ) {
         return "PROTEIN";
     } else {
         return "NUCLEOTIDE";