From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Fri, 14 May 2010 13:09:25 +0000 (+0000)
Subject: cleaning up ruby code dir
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=ebebb2fbebded793d93a1e1231364ebaf6d43188;p=biopieces.git

cleaning up ruby code dir

git-svn-id: http://biopieces.googlecode.com/svn/trunk@952 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/Maasha/lib/biopieces.rb b/code_ruby/Maasha/lib/biopieces.rb
deleted file mode 100755
index 61d9cd7..0000000
--- a/code_ruby/Maasha/lib/biopieces.rb
+++ /dev/null
@@ -1,62 +0,0 @@
-class BioPieces
-	RECORD_DELIMITER = "\n---\n"
-
-	class Record
-		attr_reader :__hash__
- 
-		def initialize( data )
-			@__hash__ = data
-		end
-	
-		def method_missing( name, *args, &block )
-			if args.empty? && @__hash__.has_key?( name ) then
-				@__hash__[ name ]
-			else
-				super # get the original exception
-			end
-		end
-	
-		def to_s
-			@__hash__.map { | key, value | "#{ key }: #{ value }" }.join( "\n" ) + RECORD_DELIMITER
-		end
-	
-		def to_hash
-			@__hash__.dup
-		end
-	end
- 
-	def self.file( path )
-		bp = new( File.open( path ) )
-		yield bp if block_given?
-		bp
-	ensure
-		# if no block was given, the user wants the BioPieces instance
-		# with a still open File so he can read it, so only close if a block
-		# had been given.
-		bp.close if block_given?
-	end
- 
-	def initialize( stream )
-		@stream = stream
-	end
- 
-	def close
-		@stream.close if @stream.respond_to? :close
-	end
- 
-	def record_get
-		return unless block = @stream.gets( RECORD_DELIMITER )
- 
-		block.chomp!( RECORD_DELIMITER )
-		data = Hash[ *block.split( /: |\n/, 2 ) ]
-		Record.new( data )
-	end
-  
-	def each
-		yield record_get until @stream.eof?
-		self # not to have a messy return value
-	end
-end
-
-
-__END__
diff --git a/code_ruby/Maasha/lib/biopieces_old.rb b/code_ruby/Maasha/lib/biopieces_old.rb
new file mode 100755
index 0000000..61d9cd7
--- /dev/null
+++ b/code_ruby/Maasha/lib/biopieces_old.rb
@@ -0,0 +1,62 @@
+class BioPieces
+	RECORD_DELIMITER = "\n---\n"
+
+	class Record
+		attr_reader :__hash__
+ 
+		def initialize( data )
+			@__hash__ = data
+		end
+	
+		def method_missing( name, *args, &block )
+			if args.empty? && @__hash__.has_key?( name ) then
+				@__hash__[ name ]
+			else
+				super # get the original exception
+			end
+		end
+	
+		def to_s
+			@__hash__.map { | key, value | "#{ key }: #{ value }" }.join( "\n" ) + RECORD_DELIMITER
+		end
+	
+		def to_hash
+			@__hash__.dup
+		end
+	end
+ 
+	def self.file( path )
+		bp = new( File.open( path ) )
+		yield bp if block_given?
+		bp
+	ensure
+		# if no block was given, the user wants the BioPieces instance
+		# with a still open File so he can read it, so only close if a block
+		# had been given.
+		bp.close if block_given?
+	end
+ 
+	def initialize( stream )
+		@stream = stream
+	end
+ 
+	def close
+		@stream.close if @stream.respond_to? :close
+	end
+ 
+	def record_get
+		return unless block = @stream.gets( RECORD_DELIMITER )
+ 
+		block.chomp!( RECORD_DELIMITER )
+		data = Hash[ *block.split( /: |\n/, 2 ) ]
+		Record.new( data )
+	end
+  
+	def each
+		yield record_get until @stream.eof?
+		self # not to have a messy return value
+	end
+end
+
+
+__END__
diff --git a/code_ruby/Maasha/lib/bp_optparse.rb b/code_ruby/Maasha/lib/bp_optparse.rb
deleted file mode 100644
index 1946fda..0000000
--- a/code_ruby/Maasha/lib/bp_optparse.rb
+++ /dev/null
@@ -1,58 +0,0 @@
-require 'getoptlong'
-
-class BP_optparse
-	attr_accessor :options
-
-	def initialize( options = [] )
-		@options = options
-	end
-
-	# Method that adds default options to the option list.
-	def add_default_options
-		@options << { :long => 'help',       :short => '?', :type => :flag,  :mandatory => false, :default => nil, :allowed => nil, :disallowed => nil }
-		@options << { :long => 'stream_in',  :short => 'I', :type => :file!, :mandatory => false, :default => nil, :allowed => nil, :disallowed => nil }
-		@options << { :long => 'stream_out', :short => 'O', :type => :file,  :mandatory => false, :default => nil, :allowed => nil, :disallowed => nil }
-		@options << { :long => 'verbose',    :short => 'v', :type => :flag,  :mandatory => false, :default => nil, :allowed => nil, :disallowed => nil }
-	end
-
-	# Method to check if the option list contains duplicate long options.
-	def check_duplicate_long
-		hash = {}
-
-		@options.each do |opt|
-			raise ArgumentError, "Duplicate long argument" if hash.include?( opt[ :long ] )
-
-			hash[ opt[ :long ] ] = true
-		end
-	end
-
-	# Method to check if the option list contains duplicate short options.
-	def check_duplicate_short
-		hash = {}
-
-		@options.each do |opt|
-			raise ArgumentError, "Duplicate short argument" if hash.include?( opt[ :short ] )
-
-			hash[ opt[ :short ] ] = true
-		end
-	end
-
-	# Method to prepare the option list into the format of GetoptLong.
-	def compile_option_list
-		option_list = []
-
-		@options.each do |opt|
-			if opt[ :type ] == :flag
-				option_list << [ "--#{ opt[ :long ] }", "-#{ opt[ :short ] }", GetoptLong::NO_ARGUMENT ]
-			else
-				option_list << [ "--#{ opt[ :long ] }", "-#{ opt[ :short ] }", GetoptLong::REQUIRED_ARGUMENT ]
-			end
-		end
-
-		option_list
-	end
-
-	def parse_options( option_list )
-		opts = GetoptLong.new()
-	end
-end