From: westcott <westcott>
Date: Tue, 3 May 2011 13:20:50 +0000 (+0000)
Subject: changed defaults in slayer to minsnp=10 and realign=t
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=e73e95146e342e952ff96efbd67677bec2120e83;p=mothur.git

changed defaults in slayer to minsnp=10 and realign=t
---

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index 1119332..9299f89 100644
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -336,7 +336,7 @@ ChimeraSlayerCommand::ChimeraSlayerCommand(string option)  {
 			temp = validParameter.validFile(parameters, "minbs", false);			if (temp == "not found") { temp = "90"; }
 			convert(temp, minBS);
 			
-			temp = validParameter.validFile(parameters, "minsnp", false);			if (temp == "not found") { temp = "100"; }
+			temp = validParameter.validFile(parameters, "minsnp", false);			if (temp == "not found") { temp = "10"; }
 			convert(temp, minSNP);
 
 			temp = validParameter.validFile(parameters, "parents", false);			if (temp == "not found") { temp = "3"; }