From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Tue, 19 Apr 2011 10:10:48 +0000 (+0000)
Subject: polishing find_adaptor
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=e55c67476c655fecbcf6ec7e496055ac26678c2c;p=biopieces.git

polishing find_adaptor

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1345 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_bin/find_adaptor b/bp_bin/find_adaptor
index d68414c..cfa050f 100755
--- a/bp_bin/find_adaptor
+++ b/bp_bin/find_adaptor
@@ -32,8 +32,6 @@
 require 'biopieces'
 require 'seq'
 
-VERBOSE = true
-
 def disambiguate(adaptor)
   adaptor_disamb = adaptor.dup
   adaptor_disamb.gsub!('U', 'T')
@@ -104,10 +102,10 @@ class Seq
       pos = self.length - adaptor.length
     end
 
-    #puts self.seq if VERBOSE
+    #puts self.seq
 
     while adaptor.length > 0
-      #puts (" " * pos) + adaptor if VERBOSE
+      #puts (" " * pos) + adaptor
 
       ed_max = (adaptor.length * ed_percent * 0.01).round
 
@@ -168,7 +166,6 @@ bp.each_record do |record|
   bp.puts record
 end
 
-
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<