From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Fri, 8 Jun 2012 09:07:26 +0000 (+0000)
Subject: fixed unit tests for test_trim.rb
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=e39170f7fe2d3d1d4928dca498b4a6980f63a48f;p=biopieces.git

fixed unit tests for test_trim.rb

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1838 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/test/maasha/seq/test_trim.rb b/code_ruby/test/maasha/seq/test_trim.rb
index 7c491bb..9c3f7d0 100755
--- a/code_ruby/test/maasha/seq/test_trim.rb
+++ b/code_ruby/test/maasha/seq/test_trim.rb
@@ -61,8 +61,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "AAAAATCG"
     @entry.qual = "hhhhhgfe"
     new_entry = @entry.quality_trim_right(38)
-    assert_equal("AAAAAT", new_entry.seq) 
-    assert_equal("hhhhhg", new_entry.qual) 
+    assert_equal("AAAAATC", new_entry.seq) 
+    assert_equal("hhhhhgf", new_entry.qual) 
     assert_equal("AAAAATCG", @entry.seq) 
     assert_equal("hhhhhgfe", @entry.qual) 
   end
@@ -71,8 +71,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "AAAAATCG"
     @entry.qual = "hhhhhgfe"
     @entry.quality_trim_right!(38)
-    assert_equal("AAAAAT", @entry.seq) 
-    assert_equal("hhhhhg", @entry.qual) 
+    assert_equal("AAAAATC", @entry.seq) 
+    assert_equal("hhhhhgf", @entry.qual) 
   end
 
   def test_Trim_quality_trim_right_with_all_low_qual_returns_correctly
@@ -87,8 +87,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "GCTAAAAA"
     @entry.qual = "efghhhhh"
     new_entry = @entry.quality_trim_left(38)
-    assert_equal("TAAAAA", new_entry.seq) 
-    assert_equal("ghhhhh", new_entry.qual) 
+    assert_equal("CTAAAAA", new_entry.seq) 
+    assert_equal("fghhhhh", new_entry.qual) 
     assert_equal("GCTAAAAA", @entry.seq) 
     assert_equal("efghhhhh", @entry.qual) 
   end
@@ -97,8 +97,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "GCTAAAAA"
     @entry.qual = "efghhhhh"
     @entry.quality_trim_left!(38)
-    assert_equal("TAAAAA", @entry.seq) 
-    assert_equal("ghhhhh", @entry.qual) 
+    assert_equal("CTAAAAA", @entry.seq) 
+    assert_equal("fghhhhh", @entry.qual) 
   end
 
   def test_Trim_quality_trim_left_with_all_low_qual_returns_correctly
@@ -113,8 +113,8 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "GCTAAAAAGTG"
     @entry.qual = "efghhhhhgfe"
     new_entry = @entry.quality_trim(38)
-    assert_equal("TAAAAAG", new_entry.seq) 
-    assert_equal("ghhhhhg", new_entry.qual) 
+    assert_equal("CTAAAAAGT", new_entry.seq) 
+    assert_equal("fghhhhhgf", new_entry.qual) 
     assert_equal("GCTAAAAAGTG", @entry.seq) 
     assert_equal("efghhhhhgfe", @entry.qual) 
   end
@@ -123,16 +123,16 @@ class TestTrim < Test::Unit::TestCase
     @entry.seq  = "GCTAAAAAGTG"
     @entry.qual = "efghhhhhgfe"
     @entry.quality_trim!(38)
-    assert_equal("TAAAAAG", @entry.seq) 
-    assert_equal("ghhhhhg", @entry.qual) 
+    assert_equal("CTAAAAAGT", @entry.seq) 
+    assert_equal("fghhhhhgf", @entry.qual) 
   end
 
   def test_Trim_quality_trim_with_min_len_bang_returns_correctly
     @entry.seq  = "GCTCAAACGTG"
     @entry.qual = "hdefghgfedh"
     @entry.quality_trim!(37, 2)
-    assert_equal("CAAAC", @entry.seq) 
-    assert_equal("fghgf", @entry.qual) 
+    assert_equal("TCAAACG", @entry.seq) 
+    assert_equal("efghgfe", @entry.qual) 
   end
 
   def test_Trim_quality_trim_with_all_low_qual_returns_correctly