From: Heng Li <lh3@live.co.uk>
Date: Mon, 2 Aug 2010 21:38:27 +0000 (+0000)
Subject: missing a column in VCF output...
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=dcf96f60024cd1acbd49cb67ff8a48e536d61f35;p=samtools.git

missing a column in VCF output...
---

diff --git a/bcf.c b/bcf.c
index 9d50a57..7286aca 100644
--- a/bcf.c
+++ b/bcf.c
@@ -222,6 +222,7 @@ char *bcf_fmt(bcf_t *bp, bcf1_t *b)
 	fmt_str(b->ref, &s); kputc('\t', &s);
 	fmt_str(b->alt, &s); kputc('\t', &s);
 	kputw(b->qual, &s); kputc('\t', &s);
+	fmt_str(b->flt, &s); kputc('\t', &s);
 	fmt_str(b->info, &s); kputc('\t', &s);
 	fmt_str(b->fmt, &s);
 	x = b->n_alleles * (b->n_alleles + 1) / 2;