From: Heng Li <lh3@live.co.uk>
Date: Tue, 3 Mar 2009 11:26:08 +0000 (+0000)
Subject:  * samtools-0.1.2-13
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=dbdb7c6264741765d93519c694f869d7941dd439;p=samtools.git

 * samtools-0.1.2-13
 * fixed a minor bug in displaying pileup
---

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 2fe32b4..34c48de 100644
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -149,7 +149,7 @@ static int pileup_func(uint32_t tid, uint32_t pos, int n, const bam_pileup1_t *p
 		if (!p->is_del) {
 			int c = bam_nt16_rev_table[bam1_seqi(bam1_seq(p->b), p->qpos)];
 			if (toupper(c) == toupper(rb)) c = bam1_strand(p->b)? ',' : '.';
-			else bam1_strand(p->b)? tolower(c) : toupper(c);
+			else c = bam1_strand(p->b)? tolower(c) : toupper(c);
 			putchar(c);
 			if (p->indel > 0) {
 				printf("+%d", p->indel);
diff --git a/bamtk.c b/bamtk.c
index b55415e..1025bef 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -3,7 +3,7 @@
 #include "bam.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.2-12"
+#define PACKAGE_VERSION "0.1.2-13"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);