From: Heng Li <lh3@live.co.uk>
Date: Wed, 2 Sep 2009 08:55:55 +0000 (+0000)
Subject:  * samtools-0.1.5-33 (r450)
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=da9fd6833bfcc4bf088f87dc29f6f5d3fc45a8b7;p=samtools.git

 * samtools-0.1.5-33 (r450)
 * fixed a bug in bam_color.c (on behalf of Nils Homer)
---

diff --git a/bam_color.c b/bam_color.c
index 75aedd6..ce637f7 100644
--- a/bam_color.c
+++ b/bam_color.c
@@ -100,8 +100,8 @@ char bam_aux_getCEi(bam1_t *b, int i)
 		cs_i = strlen(cs) - 1 - i;
 		// get current color
 		cur_color = cs[cs_i];
-		// get previous base
-		prev_b = (0 == cs_i) ? cs[0] : bam_nt16_rev_table[bam1_seqi(bam1_seq(b), i+1)];
+		// get previous base.  Note: must rc adaptor
+		prev_b = (cs_i == 1) ? "TGCAN"[(int)bam_aux_nt2int(cs[0])] : bam_nt16_rev_table[bam1_seqi(bam1_seq(b), i+1)];
 		// get current base
 		cur_b = bam_nt16_rev_table[bam1_seqi(bam1_seq(b), i)]; 
 	}
diff --git a/bamtk.c b/bamtk.c
index 41b3bc8..c91200e 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -9,7 +9,7 @@
 #endif
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.5-32 (r449)"
+#define PACKAGE_VERSION "0.1.5-33 (r450)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);