From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Mon, 5 Sep 2011 13:23:30 +0000 (+0000)
Subject: speedup of bits.rb
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=d455fad1c1fb5d3f66736604a043932259f21830;p=biopieces.git

speedup of bits.rb

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1514 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/test/maasha/test_bits.rb b/code_ruby/test/maasha/test_bits.rb
index 5a589f5..9e2d369 100755
--- a/code_ruby/test/maasha/test_bits.rb
+++ b/code_ruby/test/maasha/test_bits.rb
@@ -31,47 +31,28 @@ require 'test/unit'
 require 'pp'
 
 class TestBits < Test::Unit::TestCase 
-  def test_Bits_hamming_dist_with_uneven_lengths_raises
-    assert_raises(StringError) { String.hamming_dist("ATCG", "ATC") }
+  def test_Bits_hamming_distance_with_uneven_lengths_raises
+    assert_raise(StringError) { "ATCG".hamming_distance("A") }
   end
 
-  def test_Bits_hamming_dist_with_even_lengths_dont_raise
-    assert_nothing_raised { String.hamming_dist("ATCG", "ATCG") }
+  def test_Bits_hamming_distance_returns_correctly
+    assert_equal(0, "ATCG".hamming_distance("ATCG"))
+    assert_equal(1, "ATCX".hamming_distance("ATCG"))
+    assert_equal(2, "ATXX".hamming_distance("ATCG"))
+    assert_equal(2, "ATcg".hamming_distance("ATCG"))
+    assert_equal(3, "AXXX".hamming_distance("ATCG"))
+    assert_equal(4, "XXXX".hamming_distance("ATCG"))
   end
 
-  def test_Bits_hamming_dist_returns_correctly
-    assert_equal(0, String.hamming_dist("ATCG", "ATCG"))
-    assert_equal(1, String.hamming_dist("ATCX", "ATCG"))
-    assert_equal(2, String.hamming_dist("ATXX", "ATCG"))
-    assert_equal(2, String.hamming_dist("ATcg", "ATCG"))
-    assert_equal(3, String.hamming_dist("AXXX", "ATCG"))
-    assert_equal(4, String.hamming_dist("XXXX", "ATCG"))
-  end
-
-  def test_Bits_AND_with_equal_length_returns_correctly
+  def test_Bits_AND_returns_correctly
     assert_equal("ABCD", "abcd" & "____")
   end
 
-  def test_Bits_AND_with_unequal_length_returns_correctly
-    assert_equal("JAPH\n", "japh\nJunk" & '_____')
-    assert_equal("JAPH\n", '_____' & "japh\nJunk")
-  end
-
-  def test_Bits_OR_with_equal_length_returns_correctly
+  def test_Bits_OR_returns_correctly
     assert_equal("abcd", "ab  " | "  cd")
   end
 
-  def test_Bits_OR_with_unequal_length_returns_correctly
-    assert_equal("japh\n", "JA" | "  ph\n")
-    assert_equal("japh\n", "  ph\n" | "JA")
-  end
-
-  def test_Bits_XOR_with_equal_length_returns_correctly
+  def test_Bits_XOR_returns_correctly
     assert_equal("ABCD", "ab  " ^ "  cd")
   end
-
-  def test_Bits_XOR_with_unequal_length_returns_correctly
-    assert_equal("JAPH", "j p \n" ^ " a h")
-    assert_equal("JAPH", " a h" ^ "j p \n")
-  end
 end