From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Fri, 13 Jul 2012 14:32:53 +0000 (+0000)
Subject: fixed bug in orf finder
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=c77ca1db2f44e508986096b0cddfbf02b9aea361;p=biopieces.git

fixed bug in orf finder

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1871 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/seq.rb b/code_ruby/lib/maasha/seq.rb
index b5f07f6..62170b6 100644
--- a/code_ruby/lib/maasha/seq.rb
+++ b/code_ruby/lib/maasha/seq.rb
@@ -520,10 +520,12 @@ class Seq
         if pos_end = self.seq.index(regex_stop, pos_beg)
           length = (pos_end - pos_beg) + 3
 
-          if size_min <= length and length <= size_max
-            subseq = self.subseq(pos_beg, length)
+          if (length % 3) == 0
+            if size_min <= length and length <= size_max
+              subseq = self.subseq(pos_beg, length)
 
-            orfs << [subseq, pos_beg, pos_end + 3]
+              orfs << [subseq, pos_beg, pos_end + 3]
+            end
           end
         end