From: Heng Li <lh3@live.co.uk>
Date: Fri, 27 Mar 2009 15:09:50 +0000 (+0000)
Subject:  * samtools-0.1.2-18
X-Git-Url: https://git.donarmstrong.com/?a=commitdiff_plain;h=c311a7ff8c8f704ff8bdcba9f61967148201c008;p=samtools.git

 * samtools-0.1.2-18
 * fixed a minor bug reported by Nils Homer
---

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 79d0e63..b85fb86 100644
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -260,7 +260,7 @@ int bam_pileup(int argc, char *argv[])
 		case 'f': fn_fa = strdup(optarg); break;
 		case 'T': d->c->theta = atof(optarg); break;
 		case 'N': d->c->n_hap = atoi(optarg); break;
-		case 'r': d->c->het_rate = atoi(optarg); break;
+		case 'r': d->c->het_rate = atof(optarg); break;
 		case 'c': d->format |= BAM_PLF_CNS; break;
 		case 'i': d->format |= BAM_PLF_INDEL_ONLY; break;
 		case 'm': d->mask = atoi(optarg); break;
@@ -272,7 +272,7 @@ int bam_pileup(int argc, char *argv[])
 	}
 	if (optind == argc) {
 		fprintf(stderr, "\n");
-		fprintf(stderr, "Usage:  bamtk pileup [options] <in.bam>|<in.sam>\n\n");
+		fprintf(stderr, "Usage:  samtools pileup [options] <in.bam>|<in.sam>\n\n");
 		fprintf(stderr, "Option: -s        simple (yet incomplete) pileup format\n");
 		fprintf(stderr, "        -i        only show lines/consensus with indels\n");
 		fprintf(stderr, "        -m INT    filtering reads with bits in INT [%d]\n", d->mask);
diff --git a/bamtk.c b/bamtk.c
index 6f0ff99..494bd6f 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -3,7 +3,7 @@
 #include "bam.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.2-17"
+#define PACKAGE_VERSION "0.1.2-18"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);